Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:35371385-36151777

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46 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm26071 12 35441190 to 35441296 106 + snRNA gene predicted gene, 26071
Ahr 12 35497979 to 35534989 37010 - protein coding gene aryl-hydrocarbon receptor
Tssr116124 12 35527614 to 35527620 6 - TSS region transcription start site region 116124
Tssr116125 12 35533880 to 35533881 1 - TSS region transcription start site region 116125
Cpgi4557 12 35534058 to 35535448 1390 CpG island CpG island 4557
Tssr113220 12 35534387 to 35534396 9 + TSS region transcription start site region 113220
Gm48236 12 35534421 to 35590446 56025 + lincRNA gene predicted gene, 48236
Tssr116126 12 35534611 to 35534626 15 - TSS region transcription start site region 116126
Tssr116127 12 35534973 to 35535058 85 - TSS region transcription start site region 116127
Gm48237 12 35546031 to 35548132 2101 + lincRNA gene predicted gene, 48237
Tssr113221 12 35579305 to 35579310 5 + TSS region transcription start site region 113221
Tssr113222 12 35579354 to 35579379 25 + TSS region transcription start site region 113222
Tssr113223 12 35579542 to 35579553 11 + TSS region transcription start site region 113223
Gm34047 12 35602544 to 35694682 92138 + lincRNA gene predicted gene, 34047
Tssr116128 12 35642354 to 35642370 16 - TSS region transcription start site region 116128
9130015A21Rik 12 35672290 to 35695118 22828 - lincRNA gene RIKEN cDNA 9130015A21 gene
Tssr116129 12 35676617 to 35676624 7 - TSS region transcription start site region 116129
Tssr116130 12 35686255 to 35686269 14 - TSS region transcription start site region 116130
Tssr113224 12 35712945 to 35712949 4 + TSS region transcription start site region 113224
D12Mit147 12 35723478 to 35723626 148 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 147
Gm40388 12 35724194 to 35746671 22477 - lncRNA gene predicted gene, 40388
Tssr113225 12 35724576 to 35724625 49 + TSS region transcription start site region 113225
Gm48264 12 35746229 to 35748247 2018 + unclassified gene predicted gene, 48264
Gm46317 12 35761385 to 35761777 392 - pseudogene predicted gene, 46317
Tssr3825 12 35772845 to 35772846 1 + TSS region transcription start site region 3825
Gm7002 12 35772951 to 35775115 2164 + pseudogene predicted gene 7002
Gm9472 12 35818739 to 35819264 525 - pseudogene predicted gene 9472
Eccp 12 35901444 to 82619165 46717721 heritable phenotypic marker eccentric pupil
D12Mit221 12 35901444 to 35901551 107 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 221
Agr3 12 35925621 to 35949737 24116 + protein coding gene anterior gradient 3
Tssr113226 12 35925661 to 35925671 10 + TSS region transcription start site region 113226
Tssr113227 12 35925679 to 35925708 29 + TSS region transcription start site region 113227
Tssr113228 12 35992900 to 35992917 17 + TSS region transcription start site region 113228
Agr2 12 35992925 to 36004081 11156 + protein coding gene anterior gradient 2
Tspan13 12 36014555 to 36042478 27923 - protein coding gene tetraspanin 13
Tssr116131 12 36019675 to 36019693 18 - TSS region transcription start site region 116131
Tssr113229 12 36020527 to 36020546 19 + TSS region transcription start site region 113229
Tssr116132 12 36020562 to 36020596 34 - TSS region transcription start site region 116132
Tssr116133 12 36039550 to 36039566 16 - TSS region transcription start site region 116133
Cpgi4558 12 36041780 to 36042831 1051 CpG island CpG island 4558
Tssr116134 12 36042451 to 36042462 11 - TSS region transcription start site region 116134
Tssr116135 12 36042476 to 36042516 40 - TSS region transcription start site region 116135
Gm5434 12 36090379 to 36091829 1450 + pseudogene predicted gene 5434
Bzw2 12 36091835 to 36156825 64990 - protein coding gene basic leucine zipper and W2 domains 2
Gm18115 12 36115079 to 36115671 592 + pseudogene predicted gene, 18115
Gm48369 12 36146183 to 36147922 1739 - unclassified gene predicted gene, 48369