Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:34833435-35090883

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31 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hdac9 12 34047580 to 34917095 869515 - protein coding gene histone deacetylase 9
Tssr113209 12 34853688 to 34853689 1 + TSS region transcription start site region 113209
Gm40875 12 34872832 to 34890558 17726 + lncRNA gene predicted gene, 40875
4921508M14Rik 12 34873730 to 34874828 1098 - unclassified gene RIKEN cDNA 4921508M14 gene
Tssr116118 12 34874802 to 34874828 26 - TSS region transcription start site region 116118
Gm24429 12 34895024 to 34895155 131 + snoRNA gene predicted gene, 24429
Cpgi4555 12 34906459 to 34907741 1282 CpG island CpG island 4555
Tssr116119 12 34906880 to 34906895 15 - TSS region transcription start site region 116119
Tssr116120 12 34906909 to 34906955 46 - TSS region transcription start site region 116120
Tssr116121 12 34917089 to 34917100 11 - TSS region transcription start site region 116121
Gm33864 12 34933435 to 34990883 57448 - lncRNA gene predicted gene, 33864
Tssr113210 12 34984748 to 34984758 10 + TSS region transcription start site region 113210
Prps1l1 12 34984761 to 34986436 1675 + protein coding gene phosphoribosyl pyrophosphate synthetase 1-like 1
Tssr113211 12 34984776 to 34984814 38 + TSS region transcription start site region 113211
Tssr113212 12 34984818 to 34984838 20 + TSS region transcription start site region 113212
Tssr113213 12 34984852 to 34984873 21 + TSS region transcription start site region 113213
Tssr113214 12 34990610 to 34990615 5 + TSS region transcription start site region 113214
Gm40385 12 34990945 to 35021568 30623 - lncRNA gene predicted gene, 40385
Gm24359 12 35000337 to 35000557 220 - unclassified non-coding RNA gene predicted gene, 24359
Tssr116122 12 35021427 to 35021443 16 - TSS region transcription start site region 116122
Gm40386 12 35038321 to 35042667 4346 + lncRNA gene predicted gene, 40386
Gm33922 12 35039446 to 35043459 4013 - lncRNA gene predicted gene, 33922
D12Mit46 12 35041005 to 35041138 133 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 46
Bbaa10 12 35041005 to 65464245 30423240 QTL B.burgdorferi-associated arthritis 10
Cpgi4556 12 35046654 to 35048023 1369 CpG island CpG island 4556
Tssr113215 12 35047180 to 35047230 50 + TSS region transcription start site region 113215
Snx13 12 35047186 to 35147479 100293 + protein coding gene sorting nexin 13
Tssr113216 12 35047252 to 35047263 11 + TSS region transcription start site region 113216
Tssr116123 12 35047795 to 35047807 12 - TSS region transcription start site region 116123
Tssr113217 12 35050993 to 35050999 6 + TSS region transcription start site region 113217
Gm10933 12 35055101 to 35056961 1860 + unclassified gene predicted gene 10933