Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:33412580-35552095

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90 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi4548 12 33429436 to 33430166 730 CpG island CpG island 4548
Tssr113201 12 33429605 to 33429649 44 + TSS region transcription start site region 113201
Twistnb 12 33429624 to 33439380 9756 + protein coding gene twist basic helix-loop-helix transcription factor 1 neighbor
Tssr113202 12 33434103 to 33434110 7 + TSS region transcription start site region 113202
Gm23529 12 33452712 to 33452843 131 - snoRNA gene predicted gene, 23529
Gm9368 12 33496067 to 33496897 830 - pseudogene predicted gene 9368
Cpgi4549 12 33780876 to 33781235 359 CpG island CpG island 4549
Tssr3824 12 33845519 to 33845521 2 + TSS region transcription start site region 3824
Gm9370 12 33846454 to 33847062 608 + pseudogene predicted gene 9370
Gm40383 12 33913782 to 33936304 22522 - bidirectional promoter lncRNA gene predicted gene, 40383
Tssr113203 12 33928402 to 33928407 5 + TSS region transcription start site region 113203
Ferd3l 12 33928425 to 33929310 885 + protein coding gene Fer3 like bHLH transcription factor
Cpgi4550 12 33928645 to 33929129 484 CpG island CpG island 4550
Tssr116108 12 33936291 to 33936307 16 - TSS region transcription start site region 116108
Cpgi4551 12 33956873 to 33958914 2041 CpG island CpG island 4551
Tssr113204 12 33957645 to 33957665 20 + TSS region transcription start site region 113204
Twist1 12 33957671 to 33959829 2158 + protein coding gene twist basic helix-loop-helix transcription factor 1
Tssr113205 12 33957817 to 33957888 71 + TSS region transcription start site region 113205
Cpgi4552 12 33962433 to 33962673 240 CpG island CpG island 4552
Tssr113206 12 33964336 to 33964340 4 + TSS region transcription start site region 113206
Tssr113207 12 33965061 to 33965065 4 + TSS region transcription start site region 113207
Cpgi4553 12 33967502 to 33967842 340 CpG island CpG island 4553
Cpgi4554 12 33968511 to 33968734 223 CpG island CpG island 4554
Hdac9 12 34047580 to 34917095 869515 - protein coding gene histone deacetylase 9
Gm40384 12 34086586 to 34095984 9398 + lncRNA gene predicted gene, 40384
Tssr116109 12 34212723 to 34212731 8 - TSS region transcription start site region 116109
Gm18025 12 34290274 to 34291135 861 - pseudogene predicted gene, 18025
Tssr116110 12 34528844 to 34528904 60 - TSS region transcription start site region 116110
Tssr116111 12 34528909 to 34528927 18 - TSS region transcription start site region 116111
Gm47357 12 34623907 to 34628638 4731 - sense intronic lncRNA gene predicted gene, 47357
Tssr116112 12 34639517 to 34639519 2 - TSS region transcription start site region 116112
Tssr113208 12 34653799 to 34653803 4 + TSS region transcription start site region 113208
Tssr116113 12 34714309 to 34714328 19 - TSS region transcription start site region 116113
Tssr116114 12 34714337 to 34714349 12 - TSS region transcription start site region 116114
Tssr116115 12 34714546 to 34714568 22 - TSS region transcription start site region 116115
Tssr116116 12 34770638 to 34770641 3 - TSS region transcription start site region 116116
Gm46347 12 34773455 to 34787766 14311 - lncRNA gene predicted gene, 46347
Hdlq90 12 34789940 to 34790082 142 QTL HDL QTL 90
D12Mit60 12 34789940 to 34790082 142 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 60
Tssr116117 12 34817492 to 34817501 9 - TSS region transcription start site region 116117
Tssr113209 12 34853688 to 34853689 1 + TSS region transcription start site region 113209
Gm40875 12 34872832 to 34890558 17726 + lncRNA gene predicted gene, 40875
4921508M14Rik 12 34873730 to 34874828 1098 - unclassified gene RIKEN cDNA 4921508M14 gene
Tssr116118 12 34874802 to 34874828 26 - TSS region transcription start site region 116118
Gm24429 12 34895024 to 34895155 131 + snoRNA gene predicted gene, 24429
Cpgi4555 12 34906459 to 34907741 1282 CpG island CpG island 4555
Tssr116119 12 34906880 to 34906895 15 - TSS region transcription start site region 116119
Tssr116120 12 34906909 to 34906955 46 - TSS region transcription start site region 116120
Tssr116121 12 34917089 to 34917100 11 - TSS region transcription start site region 116121
Gm33864 12 34933435 to 34990883 57448 - lncRNA gene predicted gene, 33864
Tssr113210 12 34984748 to 34984758 10 + TSS region transcription start site region 113210
Prps1l1 12 34984761 to 34986436 1675 + protein coding gene phosphoribosyl pyrophosphate synthetase 1-like 1
Tssr113211 12 34984776 to 34984814 38 + TSS region transcription start site region 113211
Tssr113212 12 34984818 to 34984838 20 + TSS region transcription start site region 113212
Tssr113213 12 34984852 to 34984873 21 + TSS region transcription start site region 113213
Tssr113214 12 34990610 to 34990615 5 + TSS region transcription start site region 113214
Gm40385 12 34990945 to 35021568 30623 - lncRNA gene predicted gene, 40385
Gm24359 12 35000337 to 35000557 220 - unclassified non-coding RNA gene predicted gene, 24359
Tssr116122 12 35021427 to 35021443 16 - TSS region transcription start site region 116122
Gm40386 12 35038321 to 35042667 4346 + lncRNA gene predicted gene, 40386
Gm33922 12 35039446 to 35043459 4013 - lncRNA gene predicted gene, 33922
Bbaa10 12 35041005 to 65464245 30423240 QTL B.burgdorferi-associated arthritis 10
D12Mit46 12 35041005 to 35041138 133 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 46
Cpgi4556 12 35046654 to 35048023 1369 CpG island CpG island 4556
Tssr113215 12 35047180 to 35047230 50 + TSS region transcription start site region 113215
Snx13 12 35047186 to 35147479 100293 + protein coding gene sorting nexin 13
Tssr113216 12 35047252 to 35047263 11 + TSS region transcription start site region 113216
Tssr116123 12 35047795 to 35047807 12 - TSS region transcription start site region 116123
Tssr113217 12 35050993 to 35050999 6 + TSS region transcription start site region 113217
Gm10933 12 35055101 to 35056961 1860 + unclassified gene predicted gene 10933
Tssr113218 12 35097693 to 35097720 27 + TSS region transcription start site region 113218
Tssr113219 12 35135986 to 35136005 19 + TSS region transcription start site region 113219
Gm48137 12 35140892 to 35143130 2238 + unclassified gene predicted gene, 48137
Mir680-3 12 35194811 to 35194897 86 - miRNA gene microRNA 680-3
D12Mit243 12 35209967 to 35210068 101 DNA segment DNA Segment, Chr 12, Massachusetts Institute of Technology 243
Ath18 12 35209967 to 35210068 101 QTL atherosclerosis 18
Asp1 12 35235497 to 46754950 11519453 QTL audiogenic seizure prone 1
D12Mit153 12 35235497 to 35235638 141 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 153
Gm44396 12 35308891 to 35309004 113 + miRNA gene predicted gene, 44396
Gm26071 12 35441190 to 35441296 106 + snRNA gene predicted gene, 26071
Ahr 12 35497979 to 35534989 37010 - protein coding gene aryl-hydrocarbon receptor
Tssr116124 12 35527614 to 35527620 6 - TSS region transcription start site region 116124
Tssr116125 12 35533880 to 35533881 1 - TSS region transcription start site region 116125
Cpgi4557 12 35534058 to 35535448 1390 CpG island CpG island 4557
Tssr113220 12 35534387 to 35534396 9 + TSS region transcription start site region 113220
Gm48236 12 35534421 to 35590446 56025 + lincRNA gene predicted gene, 48236
Tssr116126 12 35534611 to 35534626 15 - TSS region transcription start site region 116126
Tssr116127 12 35534973 to 35535058 85 - TSS region transcription start site region 116127
Gm48237 12 35546031 to 35548132 2101 + lincRNA gene predicted gene, 48237
Tbqt3 12 109969809 to 35235497 -74734312 QTL tibia bone quality traits 3