Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:3317379-3827524

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64 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr115600 12 3341356 to 3341364 8 - TSS region transcription start site region 115600
Gm26520 12 3343816 to 3357153 13337 - lincRNA gene predicted gene, 26520
Tssr112479 12 3345389 to 3345399 10 + TSS region transcription start site region 112479
Tssr115601 12 3347796 to 3347799 3 - TSS region transcription start site region 115601
Tssr112480 12 3350187 to 3350196 9 + TSS region transcription start site region 112480
Tssr112481 12 3350266 to 3350277 11 + TSS region transcription start site region 112481
Cpgi4355 12 3356960 to 3357728 768 CpG island CpG island 4355
Tssr115602 12 3356961 to 3356980 19 - TSS region transcription start site region 115602
Tssr115603 12 3357012 to 3357026 14 - TSS region transcription start site region 115603
Tssr115604 12 3357037 to 3357055 18 - TSS region transcription start site region 115604
I920046F24Rik 12 3363509 to 3365554 2045 - protein coding gene RIKEN cDNA I920046F24 gene
Cpgi4356 12 3364864 to 3366270 1406 CpG island CpG island 4356
Tssr112482 12 3365108 to 3365142 34 + TSS region transcription start site region 112482
Kif3c 12 3365132 to 3406494 41362 + protein coding gene kinesin family member 3C
Tssr112483 12 3365143 to 3365207 64 + TSS region transcription start site region 112483
Tssr112484 12 3365218 to 3365229 11 + TSS region transcription start site region 112484
Tssr112485 12 3365290 to 3365359 69 + TSS region transcription start site region 112485
Tssr112486 12 3365385 to 3365405 20 + TSS region transcription start site region 112486
Gm48512 12 3367248 to 3404066 36818 - antisense lncRNA gene predicted gene, 48512
Gm48511 12 3368429 to 3369959 1530 + unclassified gene predicted gene, 48511
Cpgi4357 12 3388018 to 3388182 164 CpG island CpG island 4357
1110002L01Rik 12 3403883 to 3426747 22864 - antisense lncRNA gene RIKEN cDNA 1110002L01 gene
Cpgi4358 12 3426446 to 3427753 1307 CpG island CpG island 4358
Tssr115605 12 3426630 to 3426664 34 - TSS region transcription start site region 115605
Tssr115606 12 3426676 to 3426691 15 - TSS region transcription start site region 115606
Tssr115607 12 3426700 to 3426782 82 - TSS region transcription start site region 115607
Asxl2 12 3426857 to 3506852 79995 + protein coding gene additional sex combs like 2, transcriptional regulator
Tssr112487 12 3426878 to 3426931 53 + TSS region transcription start site region 112487
Tssr115608 12 3427518 to 3427533 15 - TSS region transcription start site region 115608
Tssr115609 12 3427711 to 3427722 11 - TSS region transcription start site region 115609
Tssr115610 12 3427739 to 3427802 63 - TSS region transcription start site region 115610
Gm31332 12 3438290 to 3442403 4113 + pseudogene predicted gene, 31332
Tssr112488 12 3438355 to 3438358 3 + TSS region transcription start site region 112488
Tssr112489 12 3457560 to 3457588 28 + TSS region transcription start site region 112489
Tssr112490 12 3463372 to 3463386 14 + TSS region transcription start site region 112490
Tssr112491 12 3463400 to 3463409 9 + TSS region transcription start site region 112491
Tssr112492 12 3496348 to 3496395 47 + TSS region transcription start site region 112492
Rps7-ps2 12 3521922 to 3523268 1346 - pseudogene ribosomal protein S7, pseudogene 2
Cpgi4359 12 3523501 to 3523674 173 CpG island CpG island 4359
Cpgi4360 12 3571905 to 3573188 1283 CpG island CpG island 4360
Tssr112493 12 3572178 to 3572209 31 + TSS region transcription start site region 112493
Tssr112494 12 3572379 to 3572524 145 + TSS region transcription start site region 112494
Dtnb 12 3572381 to 3781796 209415 + protein coding gene dystrobrevin, beta
Tssr112495 12 3572528 to 3572548 20 + TSS region transcription start site region 112495
Gm9039 12 3613954 to 3615357 1403 - pseudogene predicted gene 9039
Tssr112496 12 3643943 to 3643986 43 + TSS region transcription start site region 112496
Tssr115611 12 3646390 to 3646400 10 - TSS region transcription start site region 115611
Gm26050 12 3699178 to 3699240 62 + miRNA gene predicted gene, 26050
Tssr112497 12 3732186 to 3732189 3 + TSS region transcription start site region 112497
Dtnbos 12 3752543 to 3762146 9603 - antisense lncRNA gene dystrobrevin, beta, opposite strand
Gm18028 12 3771032 to 3771623 591 + pseudogene predicted gene, 18028
Tssr112498 12 3780534 to 3780549 15 + TSS region transcription start site region 112498
Cpgi4361 12 3791925 to 3792195 270 CpG island CpG island 4361
Cpgi4362 12 3805916 to 3808856 2940 CpG island CpG island 4362
Tssr112499 12 3806003 to 3806031 28 + TSS region transcription start site region 112499
Dnmt3a 12 3806007 to 3914443 108436 + protein coding gene DNA methyltransferase 3A
Tssr112500 12 3806513 to 3806527 14 + TSS region transcription start site region 112500
Tssr112501 12 3806536 to 3806571 35 + TSS region transcription start site region 112501
Tssr112502 12 3806962 to 3806973 11 + TSS region transcription start site region 112502
Tssr112503 12 3807001 to 3807016 15 + TSS region transcription start site region 112503
Tssr112504 12 3807017 to 3807063 46 + TSS region transcription start site region 112504
Tssr112505 12 3807076 to 3807086 10 + TSS region transcription start site region 112505
Tssr112506 12 3826578 to 3826591 13 + TSS region transcription start site region 112506
Tssr112507 12 3826623 to 3826635 12 + TSS region transcription start site region 112507