Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:32902441-33222600

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39 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm33484 12 32888815 to 32909134 20319 - lncRNA gene predicted gene, 33484
4933406C10Rik 12 32919384 to 32953789 34405 - lincRNA gene RIKEN cDNA 4933406C10 gene
Gm19056 12 32929151 to 32929947 796 - pseudogene predicted gene, 19056
Gm18622 12 32930155 to 32930715 560 + pseudogene predicted gene, 18622
Gm47961 12 32931480 to 32931732 252 - pseudogene predicted gene, 47961
Cpgi4543 12 32953484 to 32955047 1563 CpG island CpG island 4543
Tssr3821 12 32953717 to 32953725 8 - TSS region transcription start site region 3821
Tssr116099 12 32953772 to 32953846 74 - TSS region transcription start site region 116099
Tssr113168 12 32953855 to 32953870 15 + TSS region transcription start site region 113168
Sypl 12 32953873 to 32979502 25629 + protein coding gene synaptophysin-like protein
Tssr113169 12 32953874 to 32953891 17 + TSS region transcription start site region 113169
Tssr113170 12 32953914 to 32953936 22 + TSS region transcription start site region 113170
Tssr113171 12 32954179 to 32954278 99 + TSS region transcription start site region 113171
Tssr113172 12 32954280 to 32954292 12 + TSS region transcription start site region 113172
Tssr113173 12 32954300 to 32954306 6 + TSS region transcription start site region 113173
Tssr113174 12 32954559 to 32954573 14 + TSS region transcription start site region 113174
Tssr3822 12 32995731 to 32995783 52 + TSS region transcription start site region 3822
Gm40874 12 32996038 to 33042444 46406 + lncRNA gene predicted gene, 40874
Gm24922 12 32999909 to 33000010 101 - snRNA gene predicted gene, 24922
Cdhr3 12 33033796 to 33092875 59079 - protein coding gene cadherin-related family member 3
Tssr116100 12 33061764 to 33061802 38 - TSS region transcription start site region 116100
Tssr116101 12 33061806 to 33061818 12 - TSS region transcription start site region 116101
Gm22904 12 33062441 to 33062600 159 + miRNA gene predicted gene, 22904
Tssr116102 12 33092883 to 33092902 19 - TSS region transcription start site region 116102
F730043M19Rik 12 33111711 to 33147586 35875 - bidirectional promoter lncRNA gene RIKEN cDNA F730043M19 gene
Gm16267 12 33111962 to 33138945 26983 + lincRNA gene predicted gene 16267
Cpgi4544 12 33146836 to 33148146 1310 CpG island CpG island 4544
Tssr113175 12 33146956 to 33146994 38 + TSS region transcription start site region 113175
Tssr113176 12 33146995 to 33147004 9 + TSS region transcription start site region 113176
Tssr116103 12 33147543 to 33147590 47 - TSS region transcription start site region 116103
Tssr116104 12 33147591 to 33147617 26 - TSS region transcription start site region 116104
Atxn7l1 12 33147693 to 33373185 225492 + protein coding gene ataxin 7-like 1
Tssr113177 12 33147700 to 33147716 16 + TSS region transcription start site region 113177
Tssr113178 12 33147755 to 33147770 15 + TSS region transcription start site region 113178
Tssr113179 12 33147771 to 33147820 49 + TSS region transcription start site region 113179
Cpgi4545 12 33175951 to 33176215 264 CpG island CpG island 4545
D12Mit146 12 33188578 to 33188729 151 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 146
Atxn7l1os1 12 33193994 to 33228854 34860 - antisense lncRNA gene ataxin 7-like 1, opposite strand 1
Tssr113180 12 33207670 to 33207671 1 + TSS region transcription start site region 113180