Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:32852771-33442820

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78 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nampt 12 32820335 to 32853369 33034 + protein coding gene nicotinamide phosphoribosyltransferase
Tssr113167 12 32859350 to 32859353 3 + TSS region transcription start site region 113167
Gm47948 12 32878305 to 32880411 2106 + lincRNA gene predicted gene, 47948
Gm33484 12 32888815 to 32909134 20319 - lncRNA gene predicted gene, 33484
Gm33441 12 32896391 to 32902386 5995 + lncRNA gene predicted gene, 33441
4933406C10Rik 12 32919384 to 32953789 34405 - lincRNA gene RIKEN cDNA 4933406C10 gene
Gm19056 12 32929151 to 32929947 796 - pseudogene predicted gene, 19056
Gm18622 12 32930155 to 32930715 560 + pseudogene predicted gene, 18622
Gm47961 12 32931480 to 32931732 252 - pseudogene predicted gene, 47961
Cpgi4543 12 32953484 to 32955047 1563 CpG island CpG island 4543
Tssr3821 12 32953717 to 32953725 8 - TSS region transcription start site region 3821
Tssr116099 12 32953772 to 32953846 74 - TSS region transcription start site region 116099
Tssr113168 12 32953855 to 32953870 15 + TSS region transcription start site region 113168
Sypl 12 32953873 to 32979502 25629 + protein coding gene synaptophysin-like protein
Tssr113169 12 32953874 to 32953891 17 + TSS region transcription start site region 113169
Tssr113170 12 32953914 to 32953936 22 + TSS region transcription start site region 113170
Tssr113171 12 32954179 to 32954278 99 + TSS region transcription start site region 113171
Tssr113172 12 32954280 to 32954292 12 + TSS region transcription start site region 113172
Tssr113173 12 32954300 to 32954306 6 + TSS region transcription start site region 113173
Tssr113174 12 32954559 to 32954573 14 + TSS region transcription start site region 113174
Tssr3822 12 32995731 to 32995783 52 + TSS region transcription start site region 3822
Gm40874 12 32996038 to 33042444 46406 + lncRNA gene predicted gene, 40874
Gm24922 12 32999909 to 33000010 101 - snRNA gene predicted gene, 24922
Cdhr3 12 33033796 to 33092875 59079 - protein coding gene cadherin-related family member 3
Tssr116100 12 33061764 to 33061802 38 - TSS region transcription start site region 116100
Tssr116101 12 33061806 to 33061818 12 - TSS region transcription start site region 116101
Gm22904 12 33062441 to 33062600 159 + miRNA gene predicted gene, 22904
Tssr116102 12 33092883 to 33092902 19 - TSS region transcription start site region 116102
F730043M19Rik 12 33111711 to 33147586 35875 - bidirectional promoter lncRNA gene RIKEN cDNA F730043M19 gene
Gm16267 12 33111962 to 33138945 26983 + lincRNA gene predicted gene 16267
Cpgi4544 12 33146836 to 33148146 1310 CpG island CpG island 4544
Tssr113175 12 33146956 to 33146994 38 + TSS region transcription start site region 113175
Tssr113176 12 33146995 to 33147004 9 + TSS region transcription start site region 113176
Tssr116103 12 33147543 to 33147590 47 - TSS region transcription start site region 116103
Tssr116104 12 33147591 to 33147617 26 - TSS region transcription start site region 116104
Atxn7l1 12 33147693 to 33373185 225492 + protein coding gene ataxin 7-like 1
Tssr113177 12 33147700 to 33147716 16 + TSS region transcription start site region 113177
Tssr113178 12 33147755 to 33147770 15 + TSS region transcription start site region 113178
Tssr113179 12 33147771 to 33147820 49 + TSS region transcription start site region 113179
Cpgi4545 12 33175951 to 33176215 264 CpG island CpG island 4545
D12Mit146 12 33188578 to 33188729 151 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 146
Atxn7l1os1 12 33193994 to 33228854 34860 - antisense lncRNA gene ataxin 7-like 1, opposite strand 1
Tssr113180 12 33207670 to 33207671 1 + TSS region transcription start site region 113180
Tssr113181 12 33250123 to 33250154 31 + TSS region transcription start site region 113181
Gm38649 12 33252441 to 33259993 7552 - lncRNA gene predicted gene, 38649
Tssr3823 12 33279449 to 33279450 1 - TSS region transcription start site region 3823
Tssr116105 12 33284544 to 33284549 5 - TSS region transcription start site region 116105
Tssr113182 12 33302246 to 33302266 20 + TSS region transcription start site region 113182
Cpgi4546 12 33302867 to 33303113 246 CpG island CpG island 4546
Tssr113183 12 33313989 to 33314019 30 + TSS region transcription start site region 113183
Tssr113184 12 33314262 to 33314288 26 + TSS region transcription start site region 113184
Tssr113185 12 33314289 to 33314328 39 + TSS region transcription start site region 113185
Tssr113186 12 33314333 to 33314368 35 + TSS region transcription start site region 113186
Tssr113187 12 33314375 to 33314408 33 + TSS region transcription start site region 113187
Tssr116106 12 33315241 to 33315262 21 - TSS region transcription start site region 116106
Tssr113188 12 33315393 to 33315411 18 + TSS region transcription start site region 113188
Tssr113189 12 33315412 to 33315447 35 + TSS region transcription start site region 113189
Tssr113190 12 33315490 to 33315501 11 + TSS region transcription start site region 113190
Tssr113191 12 33315513 to 33315526 13 + TSS region transcription start site region 113191
Tssr116107 12 33316644 to 33316655 11 - TSS region transcription start site region 116107
4933422E07Rik 12 33329591 to 33330466 875 unclassified gene RIKEN cDNA 4933422E07 gene
Tssr113192 12 33333153 to 33333155 2 + TSS region transcription start site region 113192
Tssr113193 12 33333235 to 33333250 15 + TSS region transcription start site region 113193
Tssr113194 12 33337413 to 33337425 12 + TSS region transcription start site region 113194
Tssr113195 12 33337508 to 33337511 3 + TSS region transcription start site region 113195
Tssr113196 12 33348402 to 33348408 6 + TSS region transcription start site region 113196
Atxn7l1os2 12 33358243 to 33394760 36517 - antisense lncRNA gene ataxin 7-like 1, opposite strand 2
Tssr113197 12 33374484 to 33374488 4 + TSS region transcription start site region 113197
Tssr113198 12 33394815 to 33394824 9 + TSS region transcription start site region 113198
Efcab10 12 33394854 to 33401267 6413 + protein coding gene EF-hand calcium binding domain 10
Tssr113199 12 33394858 to 33394868 10 + TSS region transcription start site region 113199
Cpgi4547 12 33395031 to 33395369 338 CpG island CpG island 4547
Tssr113200 12 33395050 to 33395090 40 + TSS region transcription start site region 113200
Gm47506 12 33401365 to 33404775 3410 - pseudogene predicted gene, 47506
Cpgi4548 12 33429436 to 33430166 730 CpG island CpG island 4548
Tssr113201 12 33429605 to 33429649 44 + TSS region transcription start site region 113201
Twistnb 12 33429624 to 33439380 9756 + protein coding gene twist basic helix-loop-helix transcription factor 1 neighbor
Tssr113202 12 33434103 to 33434110 7 + TSS region transcription start site region 113202