Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:3281446-3572753

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58 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rab10 12 3247428 to 3309969 62541 - protein coding gene RAB10, member RAS oncogene family
Tssr115590 12 3288820 to 3288832 12 - TSS region transcription start site region 115590
Tssr115591 12 3297292 to 3297309 17 - TSS region transcription start site region 115591
Cpgi4354 12 3309081 to 3310600 1519 CpG island CpG island 4354
Tssr115592 12 3309310 to 3309341 31 - TSS region transcription start site region 115592
Tssr115593 12 3309348 to 3309398 50 - TSS region transcription start site region 115593
Tssr3763 12 3309529 to 3309530 1 - TSS region transcription start site region 3763
Tssr3764 12 3309534 to 3309548 14 - TSS region transcription start site region 3764
Tssr115594 12 3309551 to 3309674 123 - TSS region transcription start site region 115594
Tssr115595 12 3309684 to 3309702 18 - TSS region transcription start site region 115595
Tssr115596 12 3309840 to 3309851 11 - TSS region transcription start site region 115596
Tssr115597 12 3309882 to 3309895 13 - TSS region transcription start site region 115597
Tssr115598 12 3309899 to 3309910 11 - TSS region transcription start site region 115598
Tssr115599 12 3309912 to 3309975 63 - TSS region transcription start site region 115599
Tssr115600 12 3341356 to 3341364 8 - TSS region transcription start site region 115600
Gm26520 12 3343816 to 3357153 13337 - lincRNA gene predicted gene, 26520
Tssr112479 12 3345389 to 3345399 10 + TSS region transcription start site region 112479
Tssr115601 12 3347796 to 3347799 3 - TSS region transcription start site region 115601
Tssr112480 12 3350187 to 3350196 9 + TSS region transcription start site region 112480
Tssr112481 12 3350266 to 3350277 11 + TSS region transcription start site region 112481
Cpgi4355 12 3356960 to 3357728 768 CpG island CpG island 4355
Tssr115602 12 3356961 to 3356980 19 - TSS region transcription start site region 115602
Tssr115603 12 3357012 to 3357026 14 - TSS region transcription start site region 115603
Tssr115604 12 3357037 to 3357055 18 - TSS region transcription start site region 115604
I920046F24Rik 12 3363509 to 3365554 2045 - protein coding gene RIKEN cDNA I920046F24 gene
Cpgi4356 12 3364864 to 3366270 1406 CpG island CpG island 4356
Tssr112482 12 3365108 to 3365142 34 + TSS region transcription start site region 112482
Kif3c 12 3365132 to 3406494 41362 + protein coding gene kinesin family member 3C
Tssr112483 12 3365143 to 3365207 64 + TSS region transcription start site region 112483
Tssr112484 12 3365218 to 3365229 11 + TSS region transcription start site region 112484
Tssr112485 12 3365290 to 3365359 69 + TSS region transcription start site region 112485
Tssr112486 12 3365385 to 3365405 20 + TSS region transcription start site region 112486
Gm48512 12 3367248 to 3404066 36818 - antisense lncRNA gene predicted gene, 48512
Gm48511 12 3368429 to 3369959 1530 + unclassified gene predicted gene, 48511
Cpgi4357 12 3388018 to 3388182 164 CpG island CpG island 4357
1110002L01Rik 12 3403883 to 3426747 22864 - antisense lncRNA gene RIKEN cDNA 1110002L01 gene
Cpgi4358 12 3426446 to 3427753 1307 CpG island CpG island 4358
Tssr115605 12 3426630 to 3426664 34 - TSS region transcription start site region 115605
Tssr115606 12 3426676 to 3426691 15 - TSS region transcription start site region 115606
Tssr115607 12 3426700 to 3426782 82 - TSS region transcription start site region 115607
Asxl2 12 3426857 to 3506852 79995 + protein coding gene additional sex combs like 2, transcriptional regulator
Tssr112487 12 3426878 to 3426931 53 + TSS region transcription start site region 112487
Tssr115608 12 3427518 to 3427533 15 - TSS region transcription start site region 115608
Tssr115609 12 3427711 to 3427722 11 - TSS region transcription start site region 115609
Tssr115610 12 3427739 to 3427802 63 - TSS region transcription start site region 115610
Gm31332 12 3438290 to 3442403 4113 + pseudogene predicted gene, 31332
Tssr112488 12 3438355 to 3438358 3 + TSS region transcription start site region 112488
Tssr112489 12 3457560 to 3457588 28 + TSS region transcription start site region 112489
Tssr112490 12 3463372 to 3463386 14 + TSS region transcription start site region 112490
Tssr112491 12 3463400 to 3463409 9 + TSS region transcription start site region 112491
Tssr112492 12 3496348 to 3496395 47 + TSS region transcription start site region 112492
Rps7-ps2 12 3521922 to 3523268 1346 - pseudogene ribosomal protein S7, pseudogene 2
Cpgi4359 12 3523501 to 3523674 173 CpG island CpG island 4359
Cpgi4360 12 3571905 to 3573188 1283 CpG island CpG island 4360
Tssr112493 12 3572178 to 3572209 31 + TSS region transcription start site region 112493
Tssr112494 12 3572379 to 3572524 145 + TSS region transcription start site region 112494
Dtnb 12 3572381 to 3781796 209415 + protein coding gene dystrobrevin, beta
Tssr112495 12 3572528 to 3572548 20 + TSS region transcription start site region 112495