Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:3253927-5213951

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315 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rab10 12 3247428 to 3309969 62541 - protein coding gene RAB10, member RAS oncogene family
Tssr115586 12 3255839 to 3255844 5 - TSS region transcription start site region 115586
Tssr115587 12 3256935 to 3256956 21 - TSS region transcription start site region 115587
Tssr115588 12 3256968 to 3257009 41 - TSS region transcription start site region 115588
Tssr115589 12 3264709 to 3264757 48 - TSS region transcription start site region 115589
Tssr115590 12 3288820 to 3288832 12 - TSS region transcription start site region 115590
Tssr115591 12 3297292 to 3297309 17 - TSS region transcription start site region 115591
Cpgi4354 12 3309081 to 3310600 1519 CpG island CpG island 4354
Tssr115592 12 3309310 to 3309341 31 - TSS region transcription start site region 115592
Tssr115593 12 3309348 to 3309398 50 - TSS region transcription start site region 115593
Tssr3763 12 3309529 to 3309530 1 - TSS region transcription start site region 3763
Tssr3764 12 3309534 to 3309548 14 - TSS region transcription start site region 3764
Tssr115594 12 3309551 to 3309674 123 - TSS region transcription start site region 115594
Tssr115595 12 3309684 to 3309702 18 - TSS region transcription start site region 115595
Tssr115596 12 3309840 to 3309851 11 - TSS region transcription start site region 115596
Tssr115597 12 3309882 to 3309895 13 - TSS region transcription start site region 115597
Tssr115598 12 3309899 to 3309910 11 - TSS region transcription start site region 115598
Tssr115599 12 3309912 to 3309975 63 - TSS region transcription start site region 115599
Tssr115600 12 3341356 to 3341364 8 - TSS region transcription start site region 115600
Gm26520 12 3343816 to 3357153 13337 - lincRNA gene predicted gene, 26520
Tssr112479 12 3345389 to 3345399 10 + TSS region transcription start site region 112479
Tssr115601 12 3347796 to 3347799 3 - TSS region transcription start site region 115601
Tssr112480 12 3350187 to 3350196 9 + TSS region transcription start site region 112480
Tssr112481 12 3350266 to 3350277 11 + TSS region transcription start site region 112481
Cpgi4355 12 3356960 to 3357728 768 CpG island CpG island 4355
Tssr115602 12 3356961 to 3356980 19 - TSS region transcription start site region 115602
Tssr115603 12 3357012 to 3357026 14 - TSS region transcription start site region 115603
Tssr115604 12 3357037 to 3357055 18 - TSS region transcription start site region 115604
I920046F24Rik 12 3363509 to 3365554 2045 - protein coding gene RIKEN cDNA I920046F24 gene
Cpgi4356 12 3364864 to 3366270 1406 CpG island CpG island 4356
Tssr112482 12 3365108 to 3365142 34 + TSS region transcription start site region 112482
Kif3c 12 3365132 to 3406494 41362 + protein coding gene kinesin family member 3C
Tssr112483 12 3365143 to 3365207 64 + TSS region transcription start site region 112483
Tssr112484 12 3365218 to 3365229 11 + TSS region transcription start site region 112484
Tssr112485 12 3365290 to 3365359 69 + TSS region transcription start site region 112485
Tssr112486 12 3365385 to 3365405 20 + TSS region transcription start site region 112486
Gm48512 12 3367248 to 3404066 36818 - antisense lncRNA gene predicted gene, 48512
Gm48511 12 3368429 to 3369959 1530 + unclassified gene predicted gene, 48511
Cpgi4357 12 3388018 to 3388182 164 CpG island CpG island 4357
1110002L01Rik 12 3403883 to 3426747 22864 - antisense lncRNA gene RIKEN cDNA 1110002L01 gene
Cpgi4358 12 3426446 to 3427753 1307 CpG island CpG island 4358
Tssr115605 12 3426630 to 3426664 34 - TSS region transcription start site region 115605
Tssr115606 12 3426676 to 3426691 15 - TSS region transcription start site region 115606
Tssr115607 12 3426700 to 3426782 82 - TSS region transcription start site region 115607
Asxl2 12 3426857 to 3506852 79995 + protein coding gene additional sex combs like 2, transcriptional regulator
Tssr112487 12 3426878 to 3426931 53 + TSS region transcription start site region 112487
Tssr115608 12 3427518 to 3427533 15 - TSS region transcription start site region 115608
Tssr115609 12 3427711 to 3427722 11 - TSS region transcription start site region 115609
Tssr115610 12 3427739 to 3427802 63 - TSS region transcription start site region 115610
Gm31332 12 3438290 to 3442403 4113 + pseudogene predicted gene, 31332
Tssr112488 12 3438355 to 3438358 3 + TSS region transcription start site region 112488
Tssr112489 12 3457560 to 3457588 28 + TSS region transcription start site region 112489
Tssr112490 12 3463372 to 3463386 14 + TSS region transcription start site region 112490
Tssr112491 12 3463400 to 3463409 9 + TSS region transcription start site region 112491
Tssr112492 12 3496348 to 3496395 47 + TSS region transcription start site region 112492
Rps7-ps2 12 3521922 to 3523268 1346 - pseudogene ribosomal protein S7, pseudogene 2
Cpgi4359 12 3523501 to 3523674 173 CpG island CpG island 4359
Cpgi4360 12 3571905 to 3573188 1283 CpG island CpG island 4360
Tssr112493 12 3572178 to 3572209 31 + TSS region transcription start site region 112493
Tssr112494 12 3572379 to 3572524 145 + TSS region transcription start site region 112494
Dtnb 12 3572381 to 3781796 209415 + protein coding gene dystrobrevin, beta
Tssr112495 12 3572528 to 3572548 20 + TSS region transcription start site region 112495
Gm9039 12 3613954 to 3615357 1403 - pseudogene predicted gene 9039
Tssr112496 12 3643943 to 3643986 43 + TSS region transcription start site region 112496
Tssr115611 12 3646390 to 3646400 10 - TSS region transcription start site region 115611
Gm26050 12 3699178 to 3699240 62 + miRNA gene predicted gene, 26050
Tssr112497 12 3732186 to 3732189 3 + TSS region transcription start site region 112497
Dtnbos 12 3752543 to 3762146 9603 - antisense lncRNA gene dystrobrevin, beta, opposite strand
Gm18028 12 3771032 to 3771623 591 + pseudogene predicted gene, 18028
Tssr112498 12 3780534 to 3780549 15 + TSS region transcription start site region 112498
Cpgi4361 12 3791925 to 3792195 270 CpG island CpG island 4361
Cpgi4362 12 3805916 to 3808856 2940 CpG island CpG island 4362
Tssr112499 12 3806003 to 3806031 28 + TSS region transcription start site region 112499
Dnmt3a 12 3806007 to 3914443 108436 + protein coding gene DNA methyltransferase 3A
Tssr112500 12 3806513 to 3806527 14 + TSS region transcription start site region 112500
Tssr112501 12 3806536 to 3806571 35 + TSS region transcription start site region 112501
Tssr112502 12 3806962 to 3806973 11 + TSS region transcription start site region 112502
Tssr112503 12 3807001 to 3807016 15 + TSS region transcription start site region 112503
Tssr112504 12 3807017 to 3807063 46 + TSS region transcription start site region 112504
Tssr112505 12 3807076 to 3807086 10 + TSS region transcription start site region 112505
Tssr112506 12 3826578 to 3826591 13 + TSS region transcription start site region 112506
Tssr112507 12 3826623 to 3826635 12 + TSS region transcription start site region 112507
Tssr115612 12 3834578 to 3834589 11 - TSS region transcription start site region 115612
Tssr112508 12 3834789 to 3834813 24 + TSS region transcription start site region 112508
Tssr112509 12 3834817 to 3834843 26 + TSS region transcription start site region 112509
Tssr112510 12 3834850 to 3834864 14 + TSS region transcription start site region 112510
Tssr112511 12 3834874 to 3834877 3 + TSS region transcription start site region 112511
Tssr112512 12 3834893 to 3834900 7 + TSS region transcription start site region 112512
Tssr115613 12 3835640 to 3835689 49 - TSS region transcription start site region 115613
Tssr115614 12 3856052 to 3856070 18 - TSS region transcription start site region 115614
Tssr115615 12 3856165 to 3856170 5 - TSS region transcription start site region 115615
Tssr112513 12 3856330 to 3856350 20 + TSS region transcription start site region 112513
Tssr112514 12 3856395 to 3856411 16 + TSS region transcription start site region 112514
Dnmt3aos 12 3859293 to 3862244 2951 - antisense lncRNA gene DNA methyltransferase 3A, opposite strand
Tssr112515 12 3860980 to 3860998 18 + TSS region transcription start site region 112515
Tssr112516 12 3861004 to 3861028 24 + TSS region transcription start site region 112516
Tssr115616 12 3862204 to 3862220 16 - TSS region transcription start site region 115616
Tssr115617 12 3862234 to 3862256 22 - TSS region transcription start site region 115617
Tssr115618 12 3862305 to 3862316 11 - TSS region transcription start site region 115618
Tssr115619 12 3862331 to 3862342 11 - TSS region transcription start site region 115619
Tssr112517 12 3865112 to 3865119 7 + TSS region transcription start site region 112517
Cpgi4363 12 3871107 to 3871389 282 CpG island CpG island 4363
Tssr112518 12 3871355 to 3871364 9 + TSS region transcription start site region 112518
Tssr115620 12 3872958 to 3872971 13 - TSS region transcription start site region 115620
Tssr112519 12 3873084 to 3873101 17 + TSS region transcription start site region 112519
Tssr112520 12 3873103 to 3873120 17 + TSS region transcription start site region 112520
Tssr112521 12 3873135 to 3873145 10 + TSS region transcription start site region 112521
Tssr112522 12 3873165 to 3873175 10 + TSS region transcription start site region 112522
Gm31623 12 3879385 to 3894596 15211 - lncRNA gene predicted gene, 31623
Tssr112523 12 3886008 to 3886013 5 + TSS region transcription start site region 112523
Cpgi4364 12 3891214 to 3891428 214 CpG island CpG island 4364
Tssr112524 12 3891308 to 3891358 50 + TSS region transcription start site region 112524
Tssr112525 12 3891753 to 3891801 48 + TSS region transcription start site region 112525
Tssr112526 12 3891810 to 3891829 19 + TSS region transcription start site region 112526
Cpgi4365 12 3891873 to 3892124 251 CpG island CpG island 4365
Tssr115621 12 3894639 to 3894660 21 - TSS region transcription start site region 115621
Tssr112527 12 3894798 to 3894864 66 + TSS region transcription start site region 112527
Tssr112528 12 3894881 to 3894896 15 + TSS region transcription start site region 112528
Tssr112529 12 3895468 to 3895487 19 + TSS region transcription start site region 112529
Tssr112530 12 3897384 to 3897396 12 + TSS region transcription start site region 112530
Tssr112531 12 3897405 to 3897436 31 + TSS region transcription start site region 112531
Tssr112532 12 3904188 to 3904200 12 + TSS region transcription start site region 112532
Tssr112533 12 3905352 to 3905353 1 + TSS region transcription start site region 112533
Tssr112534 12 3906808 to 3906821 13 + TSS region transcription start site region 112534
Tssr112535 12 3907602 to 3907619 17 + TSS region transcription start site region 112535
Tssr112536 12 3907673 to 3907705 32 + TSS region transcription start site region 112536
Tssr112537 12 3907746 to 3907766 20 + TSS region transcription start site region 112537
Tssr115622 12 3907835 to 3907855 20 - TSS region transcription start site region 115622
Tssr112538 12 3908220 to 3908229 9 + TSS region transcription start site region 112538
Tssr112539 12 3913160 to 3913183 23 + TSS region transcription start site region 112539
Tssr112540 12 3913394 to 3913414 20 + TSS region transcription start site region 112540
D12Mit1000 12 3917243 to 3917392 149 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 1000
Cpgi4366 12 3930101 to 3930276 175 CpG island CpG island 4366
Cpgi4367 12 3930584 to 3931055 471 CpG island CpG island 4367
Gm9088 12 3931533 to 3932040 507 - pseudogene predicted gene 9088
Cpgi4368 12 3942308 to 3942783 475 CpG island CpG island 4368
Cpgi4369 12 3954642 to 3954964 322 CpG island CpG island 4369
Tssr112541 12 3954943 to 3954957 14 + TSS region transcription start site region 112541
Pomc 12 3954951 to 3960642 5691 + protein coding gene pro-opiomelanocortin-alpha
Cpgi4370 12 3959730 to 3960521 791 CpG island CpG island 4370
Tssr112542 12 3959996 to 3960061 65 + TSS region transcription start site region 112542
Tssr115623 12 3960439 to 3960482 43 - TSS region transcription start site region 115623
Efr3b 12 3962554 to 4038915 76361 - protein coding gene EFR3 homolog B
Tssr115624 12 3972869 to 3972877 8 - TSS region transcription start site region 115624
Cpgi4371 12 3981545 to 3982271 726 CpG island CpG island 4371
Gm48001 12 3984665 to 3985422 757 + antisense lncRNA gene predicted gene, 48001
Cpgi4372 12 4037960 to 4039289 1329 CpG island CpG island 4372
Tssr115625 12 4038774 to 4038855 81 - TSS region transcription start site region 115625
Tssr115626 12 4038868 to 4038879 11 - TSS region transcription start site region 115626
Tssr115627 12 4038905 to 4038957 52 - TSS region transcription start site region 115627
Gm48122 12 4077403 to 4077624 221 - pseudogene predicted gene, 48122
Cpgi4373 12 4082258 to 4083032 774 CpG island CpG island 4373
Tssr112543 12 4082575 to 4082594 19 + TSS region transcription start site region 112543
Dnajc27 12 4082583 to 4110606 28023 + protein coding gene DnaJ heat shock protein family (Hsp40) member C27
Tssr112544 12 4082596 to 4082638 42 + TSS region transcription start site region 112544
Tssr112545 12 4082641 to 4082652 11 + TSS region transcription start site region 112545
Cpgi4374 12 4132875 to 4134067 1192 CpG island CpG island 4374
Tssr112546 12 4133047 to 4133126 79 + TSS region transcription start site region 112546
Adcy3 12 4133103 to 4213525 80422 + protein coding gene adenylate cyclase 3
Tssr112547 12 4133394 to 4133411 17 + TSS region transcription start site region 112547
Tssr112548 12 4133421 to 4133426 5 + TSS region transcription start site region 112548
Tssr112549 12 4133510 to 4133518 8 + TSS region transcription start site region 112549
Cpgi4375 12 4134358 to 4134556 198 CpG island CpG island 4375
Gm31794 12 4144328 to 4146825 2497 - lncRNA gene predicted gene, 31794
Cenpo 12 4196004 to 4234294 38290 - protein coding gene centromere protein O
Tssr115628 12 4201519 to 4201520 1 - TSS region transcription start site region 115628
Gm48210 12 4222102 to 4223361 1259 + unclassified gene predicted gene, 48210
Tssr112550 12 4225721 to 4225730 9 + TSS region transcription start site region 112550
Gm17816 12 4225743 to 4228308 2565 + pseudogene predicted gene, 17816
Tssr112551 12 4227566 to 4227574 8 + TSS region transcription start site region 112551
Cpgi4376 12 4233628 to 4234601 973 CpG island CpG island 4376
Tssr115629 12 4233714 to 4233738 24 - TSS region transcription start site region 115629
Tssr115630 12 4233904 to 4233925 21 - TSS region transcription start site region 115630
Tssr115631 12 4233927 to 4233951 24 - TSS region transcription start site region 115631
Tssr115632 12 4233958 to 4233981 23 - TSS region transcription start site region 115632
Tssr112552 12 4234023 to 4234066 43 + TSS region transcription start site region 112552
Ptrhd1 12 4234027 to 4239950 5923 + protein coding gene peptidyl-tRNA hydrolase domain containing 1
Tssr112553 12 4234086 to 4234118 32 + TSS region transcription start site region 112553
Tssr112554 12 4234123 to 4234154 31 + TSS region transcription start site region 112554
Tssr112555 12 4234438 to 4234452 14 + TSS region transcription start site region 112555
Gm29696 12 4237712 to 4238583 871 + pseudogene predicted gene, 29696
4921501I09Rik 12 4241133 to 4247671 6538 + antisense lncRNA gene RIKEN cDNA 4921501I09 gene
Ncoa1 12 4247362 to 4477182 229820 - protein coding gene nuclear receptor coactivator 1
Tssr115633 12 4248359 to 4248362 3 - TSS region transcription start site region 115633
Gm17914 12 4333306 to 4333807 501 + pseudogene predicted gene, 17914
2610001N11Rik 12 4346010 to 4346823 813 unclassified gene RIKEN cDNA 2610001N11 gene
Gm23756 12 4347647 to 4347760 113 + rRNA gene predicted gene, 23756
Tssr115634 12 4357009 to 4357018 9 - TSS region transcription start site region 115634
Gm22343 12 4394482 to 4394767 285 + unclassified non-coding RNA gene predicted gene, 22343
Tssr3765 12 4459594 to 4459618 24 + TSS region transcription start site region 3765
Tssr3766 12 4459628 to 4459654 26 + TSS region transcription start site region 3766
Cpgi4377 12 4476010 to 4477651 1641 CpG island CpG island 4377
Tssr115635 12 4477138 to 4477196 58 - TSS region transcription start site region 115635
Tssr112556 12 4507238 to 4507240 2 + TSS region transcription start site region 112556
2900045O20Rik 12 4509317 to 4522370 13053 + lincRNA gene RIKEN cDNA 2900045O20 gene
Gm31938 12 4524113 to 4529122 5009 + lincRNA gene predicted gene, 31938
Gm46332 12 4552813 to 4569573 16760 - lincRNA gene predicted gene, 46332
Tssr115636 12 4569534 to 4569547 13 - TSS region transcription start site region 115636
Gm48610 12 4572401 to 4576756 4355 - lincRNA gene predicted gene, 48610
Gm40835 12 4589179 to 4594527 5348 - protein coding gene predicted gene, 40835