Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:31883764-32873814

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120 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cog5 12 31654869 to 31937630 282761 + protein coding gene component of oligomeric golgi complex 5
Gm35666 12 31894497 to 31898825 4328 - pseudogene predicted gene, 35666
Hbp1 12 31926452 to 31950535 24083 - protein coding gene high mobility group box transcription factor 1
Tssr116057 12 31928797 to 31928801 4 - TSS region transcription start site region 116057
Tssr116058 12 31944530 to 31944531 1 - TSS region transcription start site region 116058
Tssr116059 12 31948769 to 31948774 5 - TSS region transcription start site region 116059
Cpgi4538 12 31949196 to 31950558 1362 CpG island CpG island 4538
Tssr113124 12 31949586 to 31949609 23 + TSS region transcription start site region 113124
Tssr116060 12 31950186 to 31950197 11 - TSS region transcription start site region 116060
Tssr116061 12 31950213 to 31950246 33 - TSS region transcription start site region 116061
Tssr116062 12 31950552 to 31950560 8 - TSS region transcription start site region 116062
Prkar2b 12 31958476 to 32061296 102820 - protein coding gene protein kinase, cAMP dependent regulatory, type II beta
Tssr116063 12 31996881 to 31996882 1 - TSS region transcription start site region 116063
Tssr116064 12 31996927 to 31996932 5 - TSS region transcription start site region 116064
Tssr116065 12 31996943 to 31996954 11 - TSS region transcription start site region 116065
Tssr116066 12 31996957 to 31996965 8 - TSS region transcription start site region 116066
Tssr116067 12 31996977 to 31996982 5 - TSS region transcription start site region 116067
Tssr116068 12 32017610 to 32017617 7 - TSS region transcription start site region 116068
Tssr116069 12 32017647 to 32017656 9 - TSS region transcription start site region 116069
Tssr113125 12 32017903 to 32017917 14 + TSS region transcription start site region 113125
Tssr116070 12 32057557 to 32057603 46 - TSS region transcription start site region 116070
Tssr116071 12 32058360 to 32058375 15 - TSS region transcription start site region 116071
Tssr116072 12 32058410 to 32058420 10 - TSS region transcription start site region 116072
Tssr113126 12 32059971 to 32059990 19 + TSS region transcription start site region 113126
Cpgi4539 12 32060330 to 32061608 1278 CpG island CpG island 4539
Tssr116073 12 32060944 to 32060951 7 - TSS region transcription start site region 116073
Tssr116074 12 32061194 to 32061208 14 - TSS region transcription start site region 116074
Tssr116075 12 32061221 to 32061301 80 - TSS region transcription start site region 116075
Tssr116076 12 32061305 to 32061317 12 - TSS region transcription start site region 116076
Gm33111 12 32073286 to 32080850 7564 - lincRNA gene predicted gene, 33111
Tssr116077 12 32080832 to 32080863 31 - TSS region transcription start site region 116077
5430401H09Rik 12 32096613 to 32123702 27089 - lincRNA gene RIKEN cDNA 5430401H09 gene
Obq34 12 32097332 to 32097332 0 QTL obesity QTL 34
Tssr116078 12 32109382 to 32109386 4 - TSS region transcription start site region 116078
D12Mit124 12 32112445 to 32112590 145 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 124
D12Mit124.1 12 32112666 to 32112786 120 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 124.1
Tssr116079 12 32123617 to 32123622 5 - TSS region transcription start site region 116079
Tssr116080 12 32123663 to 32123678 15 - TSS region transcription start site region 116080
Tssr116081 12 32123681 to 32123712 31 - TSS region transcription start site region 116081
Tssr116082 12 32123725 to 32123742 17 - TSS region transcription start site region 116082
Tssr116083 12 32123823 to 32123830 7 - TSS region transcription start site region 116083
Gm40374 12 32143367 to 32157217 13850 + lncRNA gene predicted gene, 40374
Pik3cg 12 32173473 to 32208659 35186 - protein coding gene phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma
Tssr116084 12 32185199 to 32185208 9 - TSS region transcription start site region 116084
D12Mit106 12 32187399 to 32187534 135 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 106
Cpgi4540 12 32205282 to 32205982 700 CpG island CpG island 4540
Tssr116085 12 32208201 to 32208230 29 - TSS region transcription start site region 116085
Tssr116086 12 32208332 to 32208400 68 - TSS region transcription start site region 116086
Tssr116087 12 32208503 to 32208514 11 - TSS region transcription start site region 116087
Tssr116088 12 32208527 to 32208542 15 - TSS region transcription start site region 116088
Tssr116089 12 32208559 to 32208572 13 - TSS region transcription start site region 116089
Tssr116090 12 32208609 to 32208683 74 - TSS region transcription start site region 116090
Gm47928 12 32219961 to 32220669 708 - pseudogene predicted gene, 47928
Gm33308 12 32246265 to 32248617 2352 + lincRNA gene predicted gene, 33308
Tssr113127 12 32246293 to 32246303 10 + TSS region transcription start site region 113127
D12Mit142 12 32283045 to 32283193 148 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 142
Gm23875 12 32354885 to 32355202 317 - unclassified non-coding RNA gene predicted gene, 23875
Cpgi4541 12 32378432 to 32379975 1543 CpG island CpG island 4541
Tssr113128 12 32378692 to 32378707 15 + TSS region transcription start site region 113128
Tssr113129 12 32378764 to 32378814 50 + TSS region transcription start site region 113129
Ccdc71l 12 32378789 to 32382943 4154 + protein coding gene coiled-coil domain containing 71 like
Tssr113130 12 32378872 to 32378895 23 + TSS region transcription start site region 113130
Tssr113131 12 32378911 to 32378929 18 + TSS region transcription start site region 113131
Tssr113132 12 32379070 to 32379101 31 + TSS region transcription start site region 113132
Tssr113133 12 32379131 to 32379178 47 + TSS region transcription start site region 113133
Tssr113134 12 32379221 to 32379234 13 + TSS region transcription start site region 113134
Tssr113135 12 32379745 to 32379756 11 + TSS region transcription start site region 113135
Tssr113136 12 32379905 to 32379940 35 + TSS region transcription start site region 113136
Gm40375 12 32390102 to 32399552 9450 - lincRNA gene predicted gene, 40375
4932429P19Rik 12 32428607 to 32431921 3314 unclassified gene RIKEN cDNA 4932429P19 gene
Gm17820 12 32486351 to 32487418 1067 - pseudogene predicted gene, 17820
Tssr116091 12 32487442 to 32487449 7 - TSS region transcription start site region 116091
Tssr116092 12 32569061 to 32569069 8 - TSS region transcription start site region 116092
Gm33380 12 32577719 to 32581504 3785 - lncRNA gene predicted gene, 33380
Gm18245 12 32672827 to 32673548 721 pseudogene predicted gene, 18245
Gm47937 12 32673180 to 32673294 114 - pseudogene predicted gene, 47937
Gm18726 12 32710161 to 32712532 2371 + pseudogene predicted gene, 18726
Gm40376 12 32724706 to 32771138 46432 + lncRNA gene predicted gene, 40376
Tssr113137 12 32724711 to 32724721 10 + TSS region transcription start site region 113137
Tssr113138 12 32724722 to 32724734 12 + TSS region transcription start site region 113138
Tssr3819 12 32767572 to 32767579 7 - TSS region transcription start site region 3819
Tssr116093 12 32770853 to 32770866 13 - TSS region transcription start site region 116093
Tssr3820 12 32770884 to 32770890 6 - TSS region transcription start site region 3820
Tssr116094 12 32770911 to 32770921 10 - TSS region transcription start site region 116094
Tssr116095 12 32770980 to 32770994 14 - TSS region transcription start site region 116095
Tssr116096 12 32816019 to 32816021 2 - TSS region transcription start site region 116096
Tssr113139 12 32819637 to 32819649 12 + TSS region transcription start site region 113139
Cpgi4542 12 32819803 to 32821218 1415 CpG island CpG island 4542
Tssr116097 12 32820057 to 32820076 19 - TSS region transcription start site region 116097
Tssr113140 12 32820231 to 32820245 14 + TSS region transcription start site region 113140
Tssr113141 12 32820304 to 32820362 58 + TSS region transcription start site region 113141
Nampt 12 32820335 to 32853369 33034 + protein coding gene nicotinamide phosphoribosyltransferase
Tssr113142 12 32820365 to 32820381 16 + TSS region transcription start site region 113142
Tssr113143 12 32820437 to 32820486 49 + TSS region transcription start site region 113143
Tssr113144 12 32820497 to 32820519 22 + TSS region transcription start site region 113144
Tssr113145 12 32820530 to 32820541 11 + TSS region transcription start site region 113145
Tssr113146 12 32820768 to 32820810 42 + TSS region transcription start site region 113146
Tssr113147 12 32820811 to 32820828 17 + TSS region transcription start site region 113147
Tssr113148 12 32821317 to 32821334 17 + TSS region transcription start site region 113148
Tssr113149 12 32821625 to 32821629 4 + TSS region transcription start site region 113149
Gdap10 12 32824116 to 32826919 2803 + lincRNA gene ganglioside-induced differentiation-associated-protein 10
Tssr113150 12 32830139 to 32830150 11 + TSS region transcription start site region 113150
Tssr113151 12 32830260 to 32830282 22 + TSS region transcription start site region 113151
Tssr113152 12 32831997 to 32832014 17 + TSS region transcription start site region 113152
Tssr113153 12 32834353 to 32834392 39 + TSS region transcription start site region 113153
Tssr113154 12 32835391 to 32835394 3 + TSS region transcription start site region 113154
Tssr113155 12 32839235 to 32839247 12 + TSS region transcription start site region 113155
Tssr113156 12 32840936 to 32840949 13 + TSS region transcription start site region 113156
Tssr113157 12 32841051 to 32841063 12 + TSS region transcription start site region 113157
Tssr113158 12 32848611 to 32848626 15 + TSS region transcription start site region 113158
Tssr113159 12 32848666 to 32848685 19 + TSS region transcription start site region 113159
Tssr113160 12 32850509 to 32850576 67 + TSS region transcription start site region 113160
Tssr113161 12 32850579 to 32850608 29 + TSS region transcription start site region 113161
Tssr113162 12 32850632 to 32850656 24 + TSS region transcription start site region 113162
Tssr113163 12 32850673 to 32850691 18 + TSS region transcription start site region 113163
Tssr113164 12 32850704 to 32850728 24 + TSS region transcription start site region 113164
Tssr113165 12 32850780 to 32850800 20 + TSS region transcription start site region 113165
Tssr113166 12 32851433 to 32851444 11 + TSS region transcription start site region 113166
Tssr116098 12 32851604 to 32851608 4 - TSS region transcription start site region 116098
Tssr113167 12 32859350 to 32859353 3 + TSS region transcription start site region 113167