Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:31378837-32048848

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70 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D12Mit108 12 31380869 to 31381010 141 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 108
Tssr113114 12 31390810 to 31390823 13 + TSS region transcription start site region 113114
Tssr113115 12 31390843 to 31390850 7 + TSS region transcription start site region 113115
Tssr113116 12 31418726 to 31418732 6 + TSS region transcription start site region 113116
Gm9359 12 31418848 to 31420068 1220 + pseudogene predicted gene 9359
Slc26a3 12 31433142 to 31473922 40780 + protein coding gene solute carrier family 26, member 3
Tssr113117 12 31438209 to 31438227 18 + TSS region transcription start site region 113117
Tssr113118 12 31447006 to 31447009 3 + TSS region transcription start site region 113118
Tssr113119 12 31461696 to 31461704 8 + TSS region transcription start site region 113119
Cbll1 12 31484829 to 31499616 14787 - protein coding gene Casitas B-lineage lymphoma-like 1
Gm29542 12 31486958 to 31487889 931 + antisense lncRNA gene predicted gene 29542
Cpgi4533 12 31498939 to 31500341 1402 CpG island CpG island 4533
Tssr116042 12 31499541 to 31499563 22 - TSS region transcription start site region 116042
Gm40362 12 31499759 to 31512966 13207 + lncRNA gene predicted gene, 40362
Tssr116043 12 31499879 to 31499892 13 - TSS region transcription start site region 116043
Gm10473 12 31500067 to 31500746 679 unclassified gene predicted gene 10473
Gm29541 12 31500068 to 31500745 677 - lincRNA gene predicted gene 29541
Slc26a4 12 31519827 to 31559969 40142 - protein coding gene solute carrier family 26, member 4
Tssr3818 12 31536556 to 31536566 10 - TSS region transcription start site region 3818
D12Mit59 12 31542527 to 31542677 150 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 59
Cpgi4534 12 31558923 to 31560005 1082 CpG island CpG island 4534
Tssr116044 12 31559983 to 31559984 1 - TSS region transcription start site region 116044
Gm48524 12 31562866 to 31563225 359 + pseudogene predicted gene, 48524
Bcap29 12 31595354 to 31634658 39304 - protein coding gene B cell receptor associated protein 29
Tssr116045 12 31617166 to 31617180 14 - TSS region transcription start site region 116045
Cpgi4535 12 31631335 to 31631595 260 CpG island CpG island 4535
Cpgi4536 12 31634208 to 31635019 811 CpG island CpG island 4536
Tssr116046 12 31634417 to 31634497 80 - TSS region transcription start site region 116046
Tssr116047 12 31634502 to 31634514 12 - TSS region transcription start site region 116047
Tssr116048 12 31634525 to 31634543 18 - TSS region transcription start site region 116048
Tssr116049 12 31634569 to 31634581 12 - TSS region transcription start site region 116049
Tssr116050 12 31634592 to 31634677 85 - TSS region transcription start site region 116050
Dus4l 12 31640050 to 31654826 14776 - protein coding gene dihydrouridine synthase 4-like (S. cerevisiae)
Cpgi4537 12 31654509 to 31655452 943 CpG island CpG island 4537
Tssr116051 12 31654767 to 31654840 73 - TSS region transcription start site region 116051
Tssr113120 12 31654848 to 31654891 43 + TSS region transcription start site region 113120
Cog5 12 31654869 to 31937630 282761 + protein coding gene component of oligomeric golgi complex 5
Tssr113121 12 31671000 to 31671005 5 + TSS region transcription start site region 113121
D12Mit270 12 31705716 to 31705862 146 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 270
Gpr22 12 31706867 to 31713926 7059 - protein coding gene G protein-coupled receptor 22
Tssr116052 12 31713741 to 31713748 7 - TSS region transcription start site region 116052
Tssr116053 12 31713818 to 31713825 7 - TSS region transcription start site region 116053
Tssr116054 12 31713837 to 31713848 11 - TSS region transcription start site region 116054
Tssr116055 12 31713860 to 31713871 11 - TSS region transcription start site region 116055
Tssr116056 12 31713873 to 31713898 25 - TSS region transcription start site region 116056
Tssr113122 12 31735691 to 31735714 23 + TSS region transcription start site region 113122
Gm48808 12 31747325 to 31747672 347 + pseudogene predicted gene, 48808
Gm18029 12 31748072 to 31748780 708 + pseudogene predicted gene, 18029
Gm48809 12 31846523 to 31849626 3103 - antisense lncRNA gene predicted gene, 48809
Gm25913 12 31858458 to 31858592 134 + snoRNA gene predicted gene, 25913
Tssr113123 12 31870582 to 31870586 4 + TSS region transcription start site region 113123
Gm35666 12 31894497 to 31898825 4328 - pseudogene predicted gene, 35666
Hbp1 12 31926452 to 31950535 24083 - protein coding gene high mobility group box transcription factor 1
Tssr116057 12 31928797 to 31928801 4 - TSS region transcription start site region 116057
Tssr116058 12 31944530 to 31944531 1 - TSS region transcription start site region 116058
Tssr116059 12 31948769 to 31948774 5 - TSS region transcription start site region 116059
Cpgi4538 12 31949196 to 31950558 1362 CpG island CpG island 4538
Tssr113124 12 31949586 to 31949609 23 + TSS region transcription start site region 113124
Tssr116060 12 31950186 to 31950197 11 - TSS region transcription start site region 116060
Tssr116061 12 31950213 to 31950246 33 - TSS region transcription start site region 116061
Tssr116062 12 31950552 to 31950560 8 - TSS region transcription start site region 116062
Prkar2b 12 31958476 to 32061296 102820 - protein coding gene protein kinase, cAMP dependent regulatory, type II beta
Tssr116063 12 31996881 to 31996882 1 - TSS region transcription start site region 116063
Tssr116064 12 31996927 to 31996932 5 - TSS region transcription start site region 116064
Tssr116065 12 31996943 to 31996954 11 - TSS region transcription start site region 116065
Tssr116066 12 31996957 to 31996965 8 - TSS region transcription start site region 116066
Tssr116067 12 31996977 to 31996982 5 - TSS region transcription start site region 116067
Tssr116068 12 32017610 to 32017617 7 - TSS region transcription start site region 116068
Tssr116069 12 32017647 to 32017656 9 - TSS region transcription start site region 116069
Tssr113125 12 32017903 to 32017917 14 + TSS region transcription start site region 113125