Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:30914961-33525669

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296 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sh3yl1 12 30911669 to 30960160 48491 + protein coding gene Sh3 domain YSC-like 1
Tssr113097 12 30953625 to 30953629 4 + TSS region transcription start site region 113097
Cpgi4527 12 31018109 to 31018348 239 CpG island CpG island 4527
Gm6992 12 31018218 to 31019824 1606 + pseudogene predicted gene 6992
Gm18502 12 31030857 to 31031055 198 + pseudogene predicted gene, 18502
Gm25408 12 31057075 to 31057207 132 + snoRNA gene predicted gene, 25408
Cpgi4528 12 31073803 to 31074434 631 CpG island CpG island 4528
Tssr113098 12 31073884 to 31073889 5 + TSS region transcription start site region 113098
Tssr113099 12 31073898 to 31073905 7 + TSS region transcription start site region 113099
Tssr113100 12 31073947 to 31073959 12 + TSS region transcription start site region 113100
Tssr113101 12 31073962 to 31073967 5 + TSS region transcription start site region 113101
Fam110c 12 31073968 to 31079940 5972 + protein coding gene family with sequence similarity 110, member C
Tssr113102 12 31073970 to 31074003 33 + TSS region transcription start site region 113102
Tssr113103 12 31074014 to 31074030 16 + TSS region transcription start site region 113103
Cpgi4529 12 31074858 to 31075232 374 CpG island CpG island 4529
Tssr116035 12 31075311 to 31075349 38 - TSS region transcription start site region 116035
Gm32443 12 31082581 to 31090561 7980 - lincRNA gene predicted gene, 32443
Tssr116036 12 31090552 to 31090569 17 - TSS region transcription start site region 116036
Gm40361 12 31099118 to 31122067 22949 - lncRNA gene predicted gene, 40361
Gm48100 12 31099621 to 31100646 1025 - pseudogene predicted gene, 48100
Gm9356 12 31125074 to 31125756 682 - pseudogene predicted gene 9356
Gm48112 12 31142760 to 31214334 71574 + pseudogene predicted gene, 48112
Tssr113104 12 31168845 to 31168870 25 + TSS region transcription start site region 113104
6030469F06Rik 12 31168862 to 31185901 17039 + lincRNA gene RIKEN cDNA 6030469F06 gene
Gm18024 12 31198375 to 31199490 1115 - pseudogene predicted gene, 18024
Gm48117 12 31234572 to 31234876 304 + pseudogene predicted gene, 48117
Gm6993 12 31240770 to 31240979 209 + pseudogene predicted gene 6993
Gm32899 12 31258651 to 31258857 206 - lncRNA gene predicted gene, 32899
Gm24613 12 31258933 to 31259062 129 - snoRNA gene predicted gene, 24613
Tssr113105 12 31264265 to 31264290 25 + TSS region transcription start site region 113105
Cpgi4530 12 31264903 to 31266381 1478 CpG island CpG island 4530
Tssr113106 12 31264987 to 31265002 15 + TSS region transcription start site region 113106
Tssr116037 12 31265104 to 31265119 15 - TSS region transcription start site region 116037
Tssr116038 12 31265132 to 31265147 15 - TSS region transcription start site region 116038
Lamb1 12 31265234 to 31329644 64410 + protein coding gene laminin B1
Tssr113107 12 31265241 to 31265267 26 + TSS region transcription start site region 113107
Tssr113108 12 31265279 to 31265322 43 + TSS region transcription start site region 113108
Tssr113109 12 31265455 to 31265466 11 + TSS region transcription start site region 113109
Tssr113110 12 31265472 to 31265484 12 + TSS region transcription start site region 113110
Tssr113111 12 31266262 to 31266309 47 + TSS region transcription start site region 113111
Tssr113112 12 31266312 to 31266338 26 + TSS region transcription start site region 113112
Cpgi4531 12 31266697 to 31266890 193 CpG island CpG island 4531
Tssr113113 12 31270239 to 31270242 3 + TSS region transcription start site region 113113
Dld 12 31331562 to 31351471 19909 - protein coding gene dihydrolipoamide dehydrogenase
Tssr116039 12 31337256 to 31337261 5 - TSS region transcription start site region 116039
Cpgi4532 12 31350852 to 31351597 745 CpG island CpG island 4532
Tssr116040 12 31351368 to 31351421 53 - TSS region transcription start site region 116040
Tssr116041 12 31351433 to 31351444 11 - TSS region transcription start site region 116041
D12Mit108 12 31380869 to 31381010 141 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 108
Tssr113114 12 31390810 to 31390823 13 + TSS region transcription start site region 113114
Tssr113115 12 31390843 to 31390850 7 + TSS region transcription start site region 113115
Tssr113116 12 31418726 to 31418732 6 + TSS region transcription start site region 113116
Gm9359 12 31418848 to 31420068 1220 + pseudogene predicted gene 9359
Slc26a3 12 31433142 to 31473922 40780 + protein coding gene solute carrier family 26, member 3
Tssr113117 12 31438209 to 31438227 18 + TSS region transcription start site region 113117
Tssr113118 12 31447006 to 31447009 3 + TSS region transcription start site region 113118
Tssr113119 12 31461696 to 31461704 8 + TSS region transcription start site region 113119
Cbll1 12 31484829 to 31499616 14787 - protein coding gene Casitas B-lineage lymphoma-like 1
Gm29542 12 31486958 to 31487889 931 + antisense lncRNA gene predicted gene 29542
Cpgi4533 12 31498939 to 31500341 1402 CpG island CpG island 4533
Tssr116042 12 31499541 to 31499563 22 - TSS region transcription start site region 116042
Gm40362 12 31499759 to 31512966 13207 + lncRNA gene predicted gene, 40362
Tssr116043 12 31499879 to 31499892 13 - TSS region transcription start site region 116043
Gm10473 12 31500067 to 31500746 679 unclassified gene predicted gene 10473
Gm29541 12 31500068 to 31500745 677 - lincRNA gene predicted gene 29541
Slc26a4 12 31519827 to 31559969 40142 - protein coding gene solute carrier family 26, member 4
Tssr3818 12 31536556 to 31536566 10 - TSS region transcription start site region 3818
D12Mit59 12 31542527 to 31542677 150 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 59
Cpgi4534 12 31558923 to 31560005 1082 CpG island CpG island 4534
Tssr116044 12 31559983 to 31559984 1 - TSS region transcription start site region 116044
Gm48524 12 31562866 to 31563225 359 + pseudogene predicted gene, 48524
Bcap29 12 31595354 to 31634658 39304 - protein coding gene B cell receptor associated protein 29
Tssr116045 12 31617166 to 31617180 14 - TSS region transcription start site region 116045
Cpgi4535 12 31631335 to 31631595 260 CpG island CpG island 4535
Cpgi4536 12 31634208 to 31635019 811 CpG island CpG island 4536
Tssr116046 12 31634417 to 31634497 80 - TSS region transcription start site region 116046
Tssr116047 12 31634502 to 31634514 12 - TSS region transcription start site region 116047
Tssr116048 12 31634525 to 31634543 18 - TSS region transcription start site region 116048
Tssr116049 12 31634569 to 31634581 12 - TSS region transcription start site region 116049
Tssr116050 12 31634592 to 31634677 85 - TSS region transcription start site region 116050
Dus4l 12 31640050 to 31654826 14776 - protein coding gene dihydrouridine synthase 4-like (S. cerevisiae)
Cpgi4537 12 31654509 to 31655452 943 CpG island CpG island 4537
Tssr116051 12 31654767 to 31654840 73 - TSS region transcription start site region 116051
Tssr113120 12 31654848 to 31654891 43 + TSS region transcription start site region 113120
Cog5 12 31654869 to 31937630 282761 + protein coding gene component of oligomeric golgi complex 5
Tssr113121 12 31671000 to 31671005 5 + TSS region transcription start site region 113121
D12Mit270 12 31705716 to 31705862 146 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 270
Gpr22 12 31706867 to 31713926 7059 - protein coding gene G protein-coupled receptor 22
Tssr116052 12 31713741 to 31713748 7 - TSS region transcription start site region 116052
Tssr116053 12 31713818 to 31713825 7 - TSS region transcription start site region 116053
Tssr116054 12 31713837 to 31713848 11 - TSS region transcription start site region 116054
Tssr116055 12 31713860 to 31713871 11 - TSS region transcription start site region 116055
Tssr116056 12 31713873 to 31713898 25 - TSS region transcription start site region 116056
Tssr113122 12 31735691 to 31735714 23 + TSS region transcription start site region 113122
Gm48808 12 31747325 to 31747672 347 + pseudogene predicted gene, 48808
Gm18029 12 31748072 to 31748780 708 + pseudogene predicted gene, 18029
Gm48809 12 31846523 to 31849626 3103 - antisense lncRNA gene predicted gene, 48809
Gm25913 12 31858458 to 31858592 134 + snoRNA gene predicted gene, 25913
Tssr113123 12 31870582 to 31870586 4 + TSS region transcription start site region 113123
Gm35666 12 31894497 to 31898825 4328 - pseudogene predicted gene, 35666
Hbp1 12 31926452 to 31950535 24083 - protein coding gene high mobility group box transcription factor 1
Tssr116057 12 31928797 to 31928801 4 - TSS region transcription start site region 116057
Tssr116058 12 31944530 to 31944531 1 - TSS region transcription start site region 116058
Tssr116059 12 31948769 to 31948774 5 - TSS region transcription start site region 116059
Cpgi4538 12 31949196 to 31950558 1362 CpG island CpG island 4538
Tssr113124 12 31949586 to 31949609 23 + TSS region transcription start site region 113124
Tssr116060 12 31950186 to 31950197 11 - TSS region transcription start site region 116060
Tssr116061 12 31950213 to 31950246 33 - TSS region transcription start site region 116061
Tssr116062 12 31950552 to 31950560 8 - TSS region transcription start site region 116062
Prkar2b 12 31958476 to 32061296 102820 - protein coding gene protein kinase, cAMP dependent regulatory, type II beta
Tssr116063 12 31996881 to 31996882 1 - TSS region transcription start site region 116063
Tssr116064 12 31996927 to 31996932 5 - TSS region transcription start site region 116064
Tssr116065 12 31996943 to 31996954 11 - TSS region transcription start site region 116065
Tssr116066 12 31996957 to 31996965 8 - TSS region transcription start site region 116066
Tssr116067 12 31996977 to 31996982 5 - TSS region transcription start site region 116067
Tssr116068 12 32017610 to 32017617 7 - TSS region transcription start site region 116068
Tssr116069 12 32017647 to 32017656 9 - TSS region transcription start site region 116069
Tssr113125 12 32017903 to 32017917 14 + TSS region transcription start site region 113125
Tssr116070 12 32057557 to 32057603 46 - TSS region transcription start site region 116070
Tssr116071 12 32058360 to 32058375 15 - TSS region transcription start site region 116071
Tssr116072 12 32058410 to 32058420 10 - TSS region transcription start site region 116072
Tssr113126 12 32059971 to 32059990 19 + TSS region transcription start site region 113126
Cpgi4539 12 32060330 to 32061608 1278 CpG island CpG island 4539
Tssr116073 12 32060944 to 32060951 7 - TSS region transcription start site region 116073
Tssr116074 12 32061194 to 32061208 14 - TSS region transcription start site region 116074
Tssr116075 12 32061221 to 32061301 80 - TSS region transcription start site region 116075
Tssr116076 12 32061305 to 32061317 12 - TSS region transcription start site region 116076
Gm33111 12 32073286 to 32080850 7564 - lincRNA gene predicted gene, 33111
Tssr116077 12 32080832 to 32080863 31 - TSS region transcription start site region 116077
5430401H09Rik 12 32096613 to 32123702 27089 - lincRNA gene RIKEN cDNA 5430401H09 gene
Obq34 12 32097332 to 32097332 0 QTL obesity QTL 34
Tssr116078 12 32109382 to 32109386 4 - TSS region transcription start site region 116078
D12Mit124 12 32112445 to 32112590 145 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 124
D12Mit124.1 12 32112666 to 32112786 120 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 124.1
Tssr116079 12 32123617 to 32123622 5 - TSS region transcription start site region 116079
Tssr116080 12 32123663 to 32123678 15 - TSS region transcription start site region 116080
Tssr116081 12 32123681 to 32123712 31 - TSS region transcription start site region 116081
Tssr116082 12 32123725 to 32123742 17 - TSS region transcription start site region 116082
Tssr116083 12 32123823 to 32123830 7 - TSS region transcription start site region 116083
Gm40374 12 32143367 to 32157217 13850 + lncRNA gene predicted gene, 40374
Pik3cg 12 32173473 to 32208659 35186 - protein coding gene phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma
Tssr116084 12 32185199 to 32185208 9 - TSS region transcription start site region 116084
D12Mit106 12 32187399 to 32187534 135 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 106
Cpgi4540 12 32205282 to 32205982 700 CpG island CpG island 4540
Tssr116085 12 32208201 to 32208230 29 - TSS region transcription start site region 116085
Tssr116086 12 32208332 to 32208400 68 - TSS region transcription start site region 116086
Tssr116087 12 32208503 to 32208514 11 - TSS region transcription start site region 116087
Tssr116088 12 32208527 to 32208542 15 - TSS region transcription start site region 116088
Tssr116089 12 32208559 to 32208572 13 - TSS region transcription start site region 116089
Tssr116090 12 32208609 to 32208683 74 - TSS region transcription start site region 116090
Gm47928 12 32219961 to 32220669 708 - pseudogene predicted gene, 47928
Gm33308 12 32246265 to 32248617 2352 + lincRNA gene predicted gene, 33308
Tssr113127 12 32246293 to 32246303 10 + TSS region transcription start site region 113127
D12Mit142 12 32283045 to 32283193 148 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 142
Gm23875 12 32354885 to 32355202 317 - unclassified non-coding RNA gene predicted gene, 23875
Cpgi4541 12 32378432 to 32379975 1543 CpG island CpG island 4541
Tssr113128 12 32378692 to 32378707 15 + TSS region transcription start site region 113128
Tssr113129 12 32378764 to 32378814 50 + TSS region transcription start site region 113129
Ccdc71l 12 32378789 to 32382943 4154 + protein coding gene coiled-coil domain containing 71 like
Tssr113130 12 32378872 to 32378895 23 + TSS region transcription start site region 113130
Tssr113131 12 32378911 to 32378929 18 + TSS region transcription start site region 113131
Tssr113132 12 32379070 to 32379101 31 + TSS region transcription start site region 113132
Tssr113133 12 32379131 to 32379178 47 + TSS region transcription start site region 113133
Tssr113134 12 32379221 to 32379234 13 + TSS region transcription start site region 113134
Tssr113135 12 32379745 to 32379756 11 + TSS region transcription start site region 113135
Tssr113136 12 32379905 to 32379940 35 + TSS region transcription start site region 113136
Gm40375 12 32390102 to 32399552 9450 - lincRNA gene predicted gene, 40375
4932429P19Rik 12 32428607 to 32431921 3314 unclassified gene RIKEN cDNA 4932429P19 gene
Gm17820 12 32486351 to 32487418 1067 - pseudogene predicted gene, 17820
Tssr116091 12 32487442 to 32487449 7 - TSS region transcription start site region 116091
Tssr116092 12 32569061 to 32569069 8 - TSS region transcription start site region 116092
Gm33380 12 32577719 to 32581504 3785 - lncRNA gene predicted gene, 33380
Gm18245 12 32672827 to 32673548 721 pseudogene predicted gene, 18245
Gm47937 12 32673180 to 32673294 114 - pseudogene predicted gene, 47937
Gm18726 12 32710161 to 32712532 2371 + pseudogene predicted gene, 18726
Gm40376 12 32724706 to 32771138 46432 + lncRNA gene predicted gene, 40376
Tssr113137 12 32724711 to 32724721 10 + TSS region transcription start site region 113137
Tssr113138 12 32724722 to 32724734 12 + TSS region transcription start site region 113138
Tssr3819 12 32767572 to 32767579 7 - TSS region transcription start site region 3819
Tssr116093 12 32770853 to 32770866 13 - TSS region transcription start site region 116093
Tssr3820 12 32770884 to 32770890 6 - TSS region transcription start site region 3820
Tssr116094 12 32770911 to 32770921 10 - TSS region transcription start site region 116094
Tssr116095 12 32770980 to 32770994 14 - TSS region transcription start site region 116095
Tssr116096 12 32816019 to 32816021 2 - TSS region transcription start site region 116096
Tssr113139 12 32819637 to 32819649 12 + TSS region transcription start site region 113139
Cpgi4542 12 32819803 to 32821218 1415 CpG island CpG island 4542
Tssr116097 12 32820057 to 32820076 19 - TSS region transcription start site region 116097
Tssr113140 12 32820231 to 32820245 14 + TSS region transcription start site region 113140
Tssr113141 12 32820304 to 32820362 58 + TSS region transcription start site region 113141
Nampt 12 32820335 to 32853369 33034 + protein coding gene nicotinamide phosphoribosyltransferase
Tssr113142 12 32820365 to 32820381 16 + TSS region transcription start site region 113142
Tssr113143 12 32820437 to 32820486 49 + TSS region transcription start site region 113143
Tssr113144 12 32820497 to 32820519 22 + TSS region transcription start site region 113144
Tssr113145 12 32820530 to 32820541 11 + TSS region transcription start site region 113145
Tssr113146 12 32820768 to 32820810 42 + TSS region transcription start site region 113146
Tssr113147 12 32820811 to 32820828 17 + TSS region transcription start site region 113147
Tssr113148 12 32821317 to 32821334 17 + TSS region transcription start site region 113148
Tssr113149 12 32821625 to 32821629 4 + TSS region transcription start site region 113149
Gdap10 12 32824116 to 32826919 2803 + lincRNA gene ganglioside-induced differentiation-associated-protein 10
Tssr113150 12 32830139 to 32830150 11 + TSS region transcription start site region 113150