Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:30841312-31691338

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99 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm32320 12 30848845 to 30870912 22067 + lncRNA gene predicted gene, 32320
Cpgi4525 12 30883842 to 30885074 1232 CpG island CpG island 4525
Tssr113090 12 30884265 to 30884272 7 + TSS region transcription start site region 113090
Tssr113091 12 30884321 to 30884326 5 + TSS region transcription start site region 113091
Alkal2 12 30884322 to 30893854 9532 + protein coding gene ALK and LTK ligand 2
Acp1 12 30893326 to 30911589 18263 - protein coding gene acid phosphatase 1, soluble
Tssr113092 12 30910544 to 30910556 12 + TSS region transcription start site region 113092
Tssr113093 12 30910559 to 30910577 18 + TSS region transcription start site region 113093
Cpgi4526 12 30911305 to 30912396 1091 CpG island CpG island 4526
Tssr116034 12 30911593 to 30911615 22 - TSS region transcription start site region 116034
Tssr113094 12 30911659 to 30911733 74 + TSS region transcription start site region 113094
Sh3yl1 12 30911669 to 30960160 48491 + protein coding gene Sh3 domain YSC-like 1
Tssr113095 12 30911775 to 30911786 11 + TSS region transcription start site region 113095
Tssr113096 12 30912159 to 30912200 41 + TSS region transcription start site region 113096
Tssr113097 12 30953625 to 30953629 4 + TSS region transcription start site region 113097
Cpgi4527 12 31018109 to 31018348 239 CpG island CpG island 4527
Gm6992 12 31018218 to 31019824 1606 + pseudogene predicted gene 6992
Gm18502 12 31030857 to 31031055 198 + pseudogene predicted gene, 18502
Gm25408 12 31057075 to 31057207 132 + snoRNA gene predicted gene, 25408
Cpgi4528 12 31073803 to 31074434 631 CpG island CpG island 4528
Tssr113098 12 31073884 to 31073889 5 + TSS region transcription start site region 113098
Tssr113099 12 31073898 to 31073905 7 + TSS region transcription start site region 113099
Tssr113100 12 31073947 to 31073959 12 + TSS region transcription start site region 113100
Tssr113101 12 31073962 to 31073967 5 + TSS region transcription start site region 113101
Fam110c 12 31073968 to 31079940 5972 + protein coding gene family with sequence similarity 110, member C
Tssr113102 12 31073970 to 31074003 33 + TSS region transcription start site region 113102
Tssr113103 12 31074014 to 31074030 16 + TSS region transcription start site region 113103
Cpgi4529 12 31074858 to 31075232 374 CpG island CpG island 4529
Tssr116035 12 31075311 to 31075349 38 - TSS region transcription start site region 116035
Gm32443 12 31082581 to 31090561 7980 - lincRNA gene predicted gene, 32443
Tssr116036 12 31090552 to 31090569 17 - TSS region transcription start site region 116036
Gm40361 12 31099118 to 31122067 22949 - lncRNA gene predicted gene, 40361
Gm48100 12 31099621 to 31100646 1025 - pseudogene predicted gene, 48100
Gm9356 12 31125074 to 31125756 682 - pseudogene predicted gene 9356
Gm48112 12 31142760 to 31214334 71574 + pseudogene predicted gene, 48112
Tssr113104 12 31168845 to 31168870 25 + TSS region transcription start site region 113104
6030469F06Rik 12 31168862 to 31185901 17039 + lincRNA gene RIKEN cDNA 6030469F06 gene
Gm18024 12 31198375 to 31199490 1115 - pseudogene predicted gene, 18024
Gm48117 12 31234572 to 31234876 304 + pseudogene predicted gene, 48117
Gm6993 12 31240770 to 31240979 209 + pseudogene predicted gene 6993
Gm32899 12 31258651 to 31258857 206 - lncRNA gene predicted gene, 32899
Gm24613 12 31258933 to 31259062 129 - snoRNA gene predicted gene, 24613
Tssr113105 12 31264265 to 31264290 25 + TSS region transcription start site region 113105
Cpgi4530 12 31264903 to 31266381 1478 CpG island CpG island 4530
Tssr113106 12 31264987 to 31265002 15 + TSS region transcription start site region 113106
Tssr116037 12 31265104 to 31265119 15 - TSS region transcription start site region 116037
Tssr116038 12 31265132 to 31265147 15 - TSS region transcription start site region 116038
Lamb1 12 31265234 to 31329644 64410 + protein coding gene laminin B1
Tssr113107 12 31265241 to 31265267 26 + TSS region transcription start site region 113107
Tssr113108 12 31265279 to 31265322 43 + TSS region transcription start site region 113108
Tssr113109 12 31265455 to 31265466 11 + TSS region transcription start site region 113109
Tssr113110 12 31265472 to 31265484 12 + TSS region transcription start site region 113110
Tssr113111 12 31266262 to 31266309 47 + TSS region transcription start site region 113111
Tssr113112 12 31266312 to 31266338 26 + TSS region transcription start site region 113112
Cpgi4531 12 31266697 to 31266890 193 CpG island CpG island 4531
Tssr113113 12 31270239 to 31270242 3 + TSS region transcription start site region 113113
Dld 12 31331562 to 31351471 19909 - protein coding gene dihydrolipoamide dehydrogenase
Tssr116039 12 31337256 to 31337261 5 - TSS region transcription start site region 116039
Cpgi4532 12 31350852 to 31351597 745 CpG island CpG island 4532
Tssr116040 12 31351368 to 31351421 53 - TSS region transcription start site region 116040
Tssr116041 12 31351433 to 31351444 11 - TSS region transcription start site region 116041
D12Mit108 12 31380869 to 31381010 141 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 108
Tssr113114 12 31390810 to 31390823 13 + TSS region transcription start site region 113114
Tssr113115 12 31390843 to 31390850 7 + TSS region transcription start site region 113115
Tssr113116 12 31418726 to 31418732 6 + TSS region transcription start site region 113116
Gm9359 12 31418848 to 31420068 1220 + pseudogene predicted gene 9359
Slc26a3 12 31433142 to 31473922 40780 + protein coding gene solute carrier family 26, member 3
Tssr113117 12 31438209 to 31438227 18 + TSS region transcription start site region 113117
Tssr113118 12 31447006 to 31447009 3 + TSS region transcription start site region 113118
Tssr113119 12 31461696 to 31461704 8 + TSS region transcription start site region 113119
Cbll1 12 31484829 to 31499616 14787 - protein coding gene Casitas B-lineage lymphoma-like 1
Gm29542 12 31486958 to 31487889 931 + antisense lncRNA gene predicted gene 29542
Cpgi4533 12 31498939 to 31500341 1402 CpG island CpG island 4533
Tssr116042 12 31499541 to 31499563 22 - TSS region transcription start site region 116042
Gm40362 12 31499759 to 31512966 13207 + lncRNA gene predicted gene, 40362
Tssr116043 12 31499879 to 31499892 13 - TSS region transcription start site region 116043
Gm10473 12 31500067 to 31500746 679 unclassified gene predicted gene 10473
Gm29541 12 31500068 to 31500745 677 - lincRNA gene predicted gene 29541
Slc26a4 12 31519827 to 31559969 40142 - protein coding gene solute carrier family 26, member 4
Tssr3818 12 31536556 to 31536566 10 - TSS region transcription start site region 3818
D12Mit59 12 31542527 to 31542677 150 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 59
Cpgi4534 12 31558923 to 31560005 1082 CpG island CpG island 4534
Tssr116044 12 31559983 to 31559984 1 - TSS region transcription start site region 116044
Gm48524 12 31562866 to 31563225 359 + pseudogene predicted gene, 48524
Bcap29 12 31595354 to 31634658 39304 - protein coding gene B cell receptor associated protein 29
Tssr116045 12 31617166 to 31617180 14 - TSS region transcription start site region 116045
Cpgi4535 12 31631335 to 31631595 260 CpG island CpG island 4535
Cpgi4536 12 31634208 to 31635019 811 CpG island CpG island 4536
Tssr116046 12 31634417 to 31634497 80 - TSS region transcription start site region 116046
Tssr116047 12 31634502 to 31634514 12 - TSS region transcription start site region 116047
Tssr116048 12 31634525 to 31634543 18 - TSS region transcription start site region 116048
Tssr116049 12 31634569 to 31634581 12 - TSS region transcription start site region 116049
Tssr116050 12 31634592 to 31634677 85 - TSS region transcription start site region 116050
Dus4l 12 31640050 to 31654826 14776 - protein coding gene dihydrouridine synthase 4-like (S. cerevisiae)
Cpgi4537 12 31654509 to 31655452 943 CpG island CpG island 4537
Tssr116051 12 31654767 to 31654840 73 - TSS region transcription start site region 116051
Tssr113120 12 31654848 to 31654891 43 + TSS region transcription start site region 113120
Cog5 12 31654869 to 31937630 282761 + protein coding gene component of oligomeric golgi complex 5
Tssr113121 12 31671000 to 31671005 5 + TSS region transcription start site region 113121