Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:30788845-31548870

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81 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm32320 12 30848845 to 30870912 22067 + lncRNA gene predicted gene, 32320
Cpgi4525 12 30883842 to 30885074 1232 CpG island CpG island 4525
Tssr113090 12 30884265 to 30884272 7 + TSS region transcription start site region 113090
Tssr113091 12 30884321 to 30884326 5 + TSS region transcription start site region 113091
Alkal2 12 30884322 to 30893854 9532 + protein coding gene ALK and LTK ligand 2
Acp1 12 30893326 to 30911589 18263 - protein coding gene acid phosphatase 1, soluble
Tssr113092 12 30910544 to 30910556 12 + TSS region transcription start site region 113092
Tssr113093 12 30910559 to 30910577 18 + TSS region transcription start site region 113093
Cpgi4526 12 30911305 to 30912396 1091 CpG island CpG island 4526
Tssr116034 12 30911593 to 30911615 22 - TSS region transcription start site region 116034
Tssr113094 12 30911659 to 30911733 74 + TSS region transcription start site region 113094
Sh3yl1 12 30911669 to 30960160 48491 + protein coding gene Sh3 domain YSC-like 1
Tssr113095 12 30911775 to 30911786 11 + TSS region transcription start site region 113095
Tssr113096 12 30912159 to 30912200 41 + TSS region transcription start site region 113096
Tssr113097 12 30953625 to 30953629 4 + TSS region transcription start site region 113097
Cpgi4527 12 31018109 to 31018348 239 CpG island CpG island 4527
Gm6992 12 31018218 to 31019824 1606 + pseudogene predicted gene 6992
Gm18502 12 31030857 to 31031055 198 + pseudogene predicted gene, 18502
Gm25408 12 31057075 to 31057207 132 + snoRNA gene predicted gene, 25408
Cpgi4528 12 31073803 to 31074434 631 CpG island CpG island 4528
Tssr113098 12 31073884 to 31073889 5 + TSS region transcription start site region 113098
Tssr113099 12 31073898 to 31073905 7 + TSS region transcription start site region 113099
Tssr113100 12 31073947 to 31073959 12 + TSS region transcription start site region 113100
Tssr113101 12 31073962 to 31073967 5 + TSS region transcription start site region 113101
Fam110c 12 31073968 to 31079940 5972 + protein coding gene family with sequence similarity 110, member C
Tssr113102 12 31073970 to 31074003 33 + TSS region transcription start site region 113102
Tssr113103 12 31074014 to 31074030 16 + TSS region transcription start site region 113103
Cpgi4529 12 31074858 to 31075232 374 CpG island CpG island 4529
Tssr116035 12 31075311 to 31075349 38 - TSS region transcription start site region 116035
Gm32443 12 31082581 to 31090561 7980 - lincRNA gene predicted gene, 32443
Tssr116036 12 31090552 to 31090569 17 - TSS region transcription start site region 116036
Gm40361 12 31099118 to 31122067 22949 - lncRNA gene predicted gene, 40361
Gm48100 12 31099621 to 31100646 1025 - pseudogene predicted gene, 48100
Gm9356 12 31125074 to 31125756 682 - pseudogene predicted gene 9356
Gm48112 12 31142760 to 31214334 71574 + pseudogene predicted gene, 48112
Tssr113104 12 31168845 to 31168870 25 + TSS region transcription start site region 113104
6030469F06Rik 12 31168862 to 31185901 17039 + lincRNA gene RIKEN cDNA 6030469F06 gene
Gm18024 12 31198375 to 31199490 1115 - pseudogene predicted gene, 18024
Gm48117 12 31234572 to 31234876 304 + pseudogene predicted gene, 48117
Gm6993 12 31240770 to 31240979 209 + pseudogene predicted gene 6993
Gm32899 12 31258651 to 31258857 206 - lncRNA gene predicted gene, 32899
Gm24613 12 31258933 to 31259062 129 - snoRNA gene predicted gene, 24613
Tssr113105 12 31264265 to 31264290 25 + TSS region transcription start site region 113105
Cpgi4530 12 31264903 to 31266381 1478 CpG island CpG island 4530
Tssr113106 12 31264987 to 31265002 15 + TSS region transcription start site region 113106
Tssr116037 12 31265104 to 31265119 15 - TSS region transcription start site region 116037
Tssr116038 12 31265132 to 31265147 15 - TSS region transcription start site region 116038
Lamb1 12 31265234 to 31329644 64410 + protein coding gene laminin B1
Tssr113107 12 31265241 to 31265267 26 + TSS region transcription start site region 113107
Tssr113108 12 31265279 to 31265322 43 + TSS region transcription start site region 113108
Tssr113109 12 31265455 to 31265466 11 + TSS region transcription start site region 113109
Tssr113110 12 31265472 to 31265484 12 + TSS region transcription start site region 113110
Tssr113111 12 31266262 to 31266309 47 + TSS region transcription start site region 113111
Tssr113112 12 31266312 to 31266338 26 + TSS region transcription start site region 113112
Cpgi4531 12 31266697 to 31266890 193 CpG island CpG island 4531
Tssr113113 12 31270239 to 31270242 3 + TSS region transcription start site region 113113
Dld 12 31331562 to 31351471 19909 - protein coding gene dihydrolipoamide dehydrogenase
Tssr116039 12 31337256 to 31337261 5 - TSS region transcription start site region 116039
Cpgi4532 12 31350852 to 31351597 745 CpG island CpG island 4532
Tssr116040 12 31351368 to 31351421 53 - TSS region transcription start site region 116040
Tssr116041 12 31351433 to 31351444 11 - TSS region transcription start site region 116041
D12Mit108 12 31380869 to 31381010 141 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 108
Tssr113114 12 31390810 to 31390823 13 + TSS region transcription start site region 113114
Tssr113115 12 31390843 to 31390850 7 + TSS region transcription start site region 113115
Tssr113116 12 31418726 to 31418732 6 + TSS region transcription start site region 113116
Gm9359 12 31418848 to 31420068 1220 + pseudogene predicted gene 9359
Slc26a3 12 31433142 to 31473922 40780 + protein coding gene solute carrier family 26, member 3
Tssr113117 12 31438209 to 31438227 18 + TSS region transcription start site region 113117
Tssr113118 12 31447006 to 31447009 3 + TSS region transcription start site region 113118
Tssr113119 12 31461696 to 31461704 8 + TSS region transcription start site region 113119
Cbll1 12 31484829 to 31499616 14787 - protein coding gene Casitas B-lineage lymphoma-like 1
Gm29542 12 31486958 to 31487889 931 + antisense lncRNA gene predicted gene 29542
Cpgi4533 12 31498939 to 31500341 1402 CpG island CpG island 4533
Tssr116042 12 31499541 to 31499563 22 - TSS region transcription start site region 116042
Gm40362 12 31499759 to 31512966 13207 + lncRNA gene predicted gene, 40362
Tssr116043 12 31499879 to 31499892 13 - TSS region transcription start site region 116043
Gm10473 12 31500067 to 31500746 679 unclassified gene predicted gene 10473
Gm29541 12 31500068 to 31500745 677 - lincRNA gene predicted gene 29541
Slc26a4 12 31519827 to 31559969 40142 - protein coding gene solute carrier family 26, member 4
Tssr3818 12 31536556 to 31536566 10 - TSS region transcription start site region 3818
D12Mit59 12 31542527 to 31542677 150 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 59