Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:30148114-31048331

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39 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D12Mit136 12 30173738 to 30173884 146 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 136
Sntg2 12 30174482 to 30373375 198893 - protein coding gene syntrophin, gamma 2
Cpgi4522 12 30372993 to 30373613 620 CpG island CpG island 4522
Tssr116028 12 30373274 to 30373285 11 - TSS region transcription start site region 116028
Tssr116029 12 30373302 to 30373315 13 - TSS region transcription start site region 116029
Tssr116030 12 30373320 to 30373337 17 - TSS region transcription start site region 116030
Tssr116031 12 30373338 to 30373351 13 - TSS region transcription start site region 116031
Tssr116032 12 30373358 to 30373380 22 - TSS region transcription start site region 116032
2310016D03Rik 12 30410559 to 30467358 56799 - lincRNA gene RIKEN cDNA 2310016D03 gene
Gm25865 12 30457968 to 30458071 103 - miRNA gene predicted gene, 25865
Tssr116033 12 30467391 to 30467401 10 - TSS region transcription start site region 116033
Tssr113087 12 30479063 to 30479072 9 + TSS region transcription start site region 113087
Gm28806 12 30482822 to 30487052 4230 - lincRNA gene predicted gene 28806
Ryk-ps1 12 30486755 to 30486989 234 + pseudogene receptor-like tyrosine kinase, pseudogene 1
Gm25243 12 30557914 to 30558120 206 - miRNA gene predicted gene, 25243
Gm32259 12 30562605 to 30577193 14588 - lncRNA gene predicted gene, 32259
Cpgi4523 12 30584180 to 30584906 726 CpG island CpG island 4523
Tssr113088 12 30584429 to 30584466 37 + TSS region transcription start site region 113088
Tmem18 12 30584443 to 30591219 6776 + protein coding gene transmembrane protein 18
Tssr113089 12 30584473 to 30584491 18 + TSS region transcription start site region 113089
Cpgi4524 12 30598114 to 30598331 217 CpG island CpG island 4524
Gm32320 12 30848845 to 30870912 22067 + lncRNA gene predicted gene, 32320
Cpgi4525 12 30883842 to 30885074 1232 CpG island CpG island 4525
Tssr113090 12 30884265 to 30884272 7 + TSS region transcription start site region 113090
Tssr113091 12 30884321 to 30884326 5 + TSS region transcription start site region 113091
Alkal2 12 30884322 to 30893854 9532 + protein coding gene ALK and LTK ligand 2
Acp1 12 30893326 to 30911589 18263 - protein coding gene acid phosphatase 1, soluble
Tssr113092 12 30910544 to 30910556 12 + TSS region transcription start site region 113092
Tssr113093 12 30910559 to 30910577 18 + TSS region transcription start site region 113093
Cpgi4526 12 30911305 to 30912396 1091 CpG island CpG island 4526
Tssr116034 12 30911593 to 30911615 22 - TSS region transcription start site region 116034
Tssr113094 12 30911659 to 30911733 74 + TSS region transcription start site region 113094
Sh3yl1 12 30911669 to 30960160 48491 + protein coding gene Sh3 domain YSC-like 1
Tssr113095 12 30911775 to 30911786 11 + TSS region transcription start site region 113095
Tssr113096 12 30912159 to 30912200 41 + TSS region transcription start site region 113096
Tssr113097 12 30953625 to 30953629 4 + TSS region transcription start site region 113097
Cpgi4527 12 31018109 to 31018348 239 CpG island CpG island 4527
Gm6992 12 31018218 to 31019824 1606 + pseudogene predicted gene 6992
Gm18502 12 31030857 to 31031055 198 + pseudogene predicted gene, 18502