Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:29989063-30969072

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44 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pxdn 12 29937956 to 30017658 79702 + protein coding gene peroxidasin
Cpgi4520 12 30002585 to 30002810 225 CpG island CpG island 4520
Tssr113086 12 30019638 to 30019641 3 + TSS region transcription start site region 113086
Tpo 12 30054659 to 30132624 77965 - protein coding gene thyroid peroxidase
Gm15691 12 30059657 to 30062113 2456 + antisense lncRNA gene predicted gene 15691
Cpgi4521 12 30103032 to 30103502 470 CpG island CpG island 4521
Gm40873 12 30133220 to 30135401 2181 - lncRNA gene predicted gene, 40873
Gm32084 12 30138447 to 30145820 7373 - lncRNA gene predicted gene, 32084
D12Mit136 12 30173738 to 30173884 146 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 136
Sntg2 12 30174482 to 30373375 198893 - protein coding gene syntrophin, gamma 2
Cpgi4522 12 30372993 to 30373613 620 CpG island CpG island 4522
Tssr116028 12 30373274 to 30373285 11 - TSS region transcription start site region 116028
Tssr116029 12 30373302 to 30373315 13 - TSS region transcription start site region 116029
Tssr116030 12 30373320 to 30373337 17 - TSS region transcription start site region 116030
Tssr116031 12 30373338 to 30373351 13 - TSS region transcription start site region 116031
Tssr116032 12 30373358 to 30373380 22 - TSS region transcription start site region 116032
2310016D03Rik 12 30410559 to 30467358 56799 - lincRNA gene RIKEN cDNA 2310016D03 gene
Gm25865 12 30457968 to 30458071 103 - miRNA gene predicted gene, 25865
Tssr116033 12 30467391 to 30467401 10 - TSS region transcription start site region 116033
Tssr113087 12 30479063 to 30479072 9 + TSS region transcription start site region 113087
Gm28806 12 30482822 to 30487052 4230 - lincRNA gene predicted gene 28806
Ryk-ps1 12 30486755 to 30486989 234 + pseudogene receptor-like tyrosine kinase, pseudogene 1
Gm25243 12 30557914 to 30558120 206 - miRNA gene predicted gene, 25243
Gm32259 12 30562605 to 30577193 14588 - lncRNA gene predicted gene, 32259
Cpgi4523 12 30584180 to 30584906 726 CpG island CpG island 4523
Tssr113088 12 30584429 to 30584466 37 + TSS region transcription start site region 113088
Tmem18 12 30584443 to 30591219 6776 + protein coding gene transmembrane protein 18
Tssr113089 12 30584473 to 30584491 18 + TSS region transcription start site region 113089
Cpgi4524 12 30598114 to 30598331 217 CpG island CpG island 4524
Gm32320 12 30848845 to 30870912 22067 + lncRNA gene predicted gene, 32320
Cpgi4525 12 30883842 to 30885074 1232 CpG island CpG island 4525
Tssr113090 12 30884265 to 30884272 7 + TSS region transcription start site region 113090
Tssr113091 12 30884321 to 30884326 5 + TSS region transcription start site region 113091
Alkal2 12 30884322 to 30893854 9532 + protein coding gene ALK and LTK ligand 2
Acp1 12 30893326 to 30911589 18263 - protein coding gene acid phosphatase 1, soluble
Tssr113092 12 30910544 to 30910556 12 + TSS region transcription start site region 113092
Tssr113093 12 30910559 to 30910577 18 + TSS region transcription start site region 113093
Cpgi4526 12 30911305 to 30912396 1091 CpG island CpG island 4526
Tssr116034 12 30911593 to 30911615 22 - TSS region transcription start site region 116034
Tssr113094 12 30911659 to 30911733 74 + TSS region transcription start site region 113094
Sh3yl1 12 30911669 to 30960160 48491 + protein coding gene Sh3 domain YSC-like 1
Tssr113095 12 30911775 to 30911786 11 + TSS region transcription start site region 113095
Tssr113096 12 30912159 to 30912200 41 + TSS region transcription start site region 113096
Tssr113097 12 30953625 to 30953629 4 + TSS region transcription start site region 113097