Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:29228220-31040401

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97 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm31569 12 29205647 to 29278718 73071 + lncRNA gene predicted gene, 31569
Cpgi4516 12 29279855 to 29280044 189 CpG island CpG island 4516
Tssr116025 12 29291010 to 29291042 32 - TSS region transcription start site region 116025
D12Mit107 12 29315526 to 29315790 264 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 107
Gm6989 12 29316915 to 29317568 653 - pseudogene predicted gene 6989
slwr 12 29342476 to 29342615 139 QTL slowlearner
D12Mit171 12 29342476 to 29342615 139 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 171
Tssr3816 12 29345939 to 29345940 1 - TSS region transcription start site region 3816
Gm31650 12 29439514 to 29458362 18848 + lncRNA gene predicted gene, 31650
Gm20208 12 29526958 to 29532197 5239 - lncRNA gene predicted gene, 20208
Tssr3817 12 29528117 to 29528133 16 - TSS region transcription start site region 3817
Tssr113059 12 29528382 to 29528468 86 + TSS region transcription start site region 113059
Myt1l 12 29528384 to 29923213 394829 + protein coding gene myelin transcription factor 1-like
Tssr113060 12 29528471 to 29528498 27 + TSS region transcription start site region 113060
Tssr113061 12 29528527 to 29528549 22 + TSS region transcription start site region 113061
Tssr113062 12 29528639 to 29528649 10 + TSS region transcription start site region 113062
Tssr116026 12 29531107 to 29531143 36 - TSS region transcription start site region 116026
Tssr113063 12 29533280 to 29533291 11 + TSS region transcription start site region 113063
Tssr113064 12 29533292 to 29533315 23 + TSS region transcription start site region 113064
Tssr113065 12 29533351 to 29533364 13 + TSS region transcription start site region 113065
Tssr113066 12 29533428 to 29533446 18 + TSS region transcription start site region 113066
Tssr113067 12 29533451 to 29533467 16 + TSS region transcription start site region 113067
Tssr113068 12 29533477 to 29533492 15 + TSS region transcription start site region 113068
Tssr113069 12 29534561 to 29534641 80 + TSS region transcription start site region 113069
Tssr113070 12 29534716 to 29534725 9 + TSS region transcription start site region 113070
Cpgi4517 12 29534749 to 29535137 388 CpG island CpG island 4517
Tssr113071 12 29534847 to 29534913 66 + TSS region transcription start site region 113071
Tssr113072 12 29535181 to 29535205 24 + TSS region transcription start site region 113072
Tssr113073 12 29535209 to 29535237 28 + TSS region transcription start site region 113073
Tssr113074 12 29566749 to 29566760 11 + TSS region transcription start site region 113074
C630031E19Rik 12 29675630 to 29686445 10815 - antisense lncRNA gene RIKEN cDNA C630031E19 gene
Tssr113075 12 29724422 to 29724430 8 + TSS region transcription start site region 113075
Tssr113076 12 29732907 to 29732910 3 + TSS region transcription start site region 113076
Tssr113077 12 29783625 to 29783642 17 + TSS region transcription start site region 113077
Tssr113078 12 29783845 to 29783865 20 + TSS region transcription start site region 113078
Tssr113079 12 29800055 to 29800072 17 + TSS region transcription start site region 113079
D12Mit1006 12 29800083 to 29800192 109 DNA segment DNA Segment, Chr 12, Massachusetts Institute of Technology 1006
D12Mit1007 12 29800166 to 29800310 144 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 1007
C030014C12Rik 12 29800368 to 29801177 809 unclassified gene RIKEN cDNA C030014C12 gene
Tssr113080 12 29811568 to 29811583 15 + TSS region transcription start site region 113080
Cpgi4518 12 29840130 to 29840295 165 CpG island CpG island 4518
Tssr113081 12 29840207 to 29840250 43 + TSS region transcription start site region 113081
Gm46346 12 29911433 to 29913161 1728 - lncRNA gene predicted gene, 46346
Tssr116027 12 29915153 to 29915162 9 - TSS region transcription start site region 116027
Gm31939 12 29924988 to 29937951 12963 - lncRNA gene predicted gene, 31939
Cpgi4519 12 29937760 to 29939017 1257 CpG island CpG island 4519
Pxdn 12 29937956 to 30017658 79702 + protein coding gene peroxidasin
Tssr113082 12 29937976 to 29937987 11 + TSS region transcription start site region 113082
Tssr113083 12 29938006 to 29938021 15 + TSS region transcription start site region 113083
Tssr113084 12 29938042 to 29938059 17 + TSS region transcription start site region 113084
Tssr113085 12 29982142 to 29982153 11 + TSS region transcription start site region 113085
Cpgi4520 12 30002585 to 30002810 225 CpG island CpG island 4520
Tssr113086 12 30019638 to 30019641 3 + TSS region transcription start site region 113086
Tpo 12 30054659 to 30132624 77965 - protein coding gene thyroid peroxidase
Gm15691 12 30059657 to 30062113 2456 + antisense lncRNA gene predicted gene 15691
Cpgi4521 12 30103032 to 30103502 470 CpG island CpG island 4521
Gm40873 12 30133220 to 30135401 2181 - lncRNA gene predicted gene, 40873
Gm32084 12 30138447 to 30145820 7373 - lncRNA gene predicted gene, 32084
D12Mit136 12 30173738 to 30173884 146 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 136
Sntg2 12 30174482 to 30373375 198893 - protein coding gene syntrophin, gamma 2
Cpgi4522 12 30372993 to 30373613 620 CpG island CpG island 4522
Tssr116028 12 30373274 to 30373285 11 - TSS region transcription start site region 116028
Tssr116029 12 30373302 to 30373315 13 - TSS region transcription start site region 116029
Tssr116030 12 30373320 to 30373337 17 - TSS region transcription start site region 116030
Tssr116031 12 30373338 to 30373351 13 - TSS region transcription start site region 116031
Tssr116032 12 30373358 to 30373380 22 - TSS region transcription start site region 116032
2310016D03Rik 12 30410559 to 30467358 56799 - lincRNA gene RIKEN cDNA 2310016D03 gene
Gm25865 12 30457968 to 30458071 103 - miRNA gene predicted gene, 25865
Tssr116033 12 30467391 to 30467401 10 - TSS region transcription start site region 116033
Tssr113087 12 30479063 to 30479072 9 + TSS region transcription start site region 113087
Gm28806 12 30482822 to 30487052 4230 - lincRNA gene predicted gene 28806
Ryk-ps1 12 30486755 to 30486989 234 + pseudogene receptor-like tyrosine kinase, pseudogene 1
Gm25243 12 30557914 to 30558120 206 - miRNA gene predicted gene, 25243
Gm32259 12 30562605 to 30577193 14588 - lncRNA gene predicted gene, 32259
Cpgi4523 12 30584180 to 30584906 726 CpG island CpG island 4523
Tssr113088 12 30584429 to 30584466 37 + TSS region transcription start site region 113088
Tmem18 12 30584443 to 30591219 6776 + protein coding gene transmembrane protein 18
Tssr113089 12 30584473 to 30584491 18 + TSS region transcription start site region 113089
Cpgi4524 12 30598114 to 30598331 217 CpG island CpG island 4524
Gm32320 12 30848845 to 30870912 22067 + lncRNA gene predicted gene, 32320
Cpgi4525 12 30883842 to 30885074 1232 CpG island CpG island 4525
Tssr113090 12 30884265 to 30884272 7 + TSS region transcription start site region 113090
Tssr113091 12 30884321 to 30884326 5 + TSS region transcription start site region 113091
Alkal2 12 30884322 to 30893854 9532 + protein coding gene ALK and LTK ligand 2
Acp1 12 30893326 to 30911589 18263 - protein coding gene acid phosphatase 1, soluble
Tssr113092 12 30910544 to 30910556 12 + TSS region transcription start site region 113092
Tssr113093 12 30910559 to 30910577 18 + TSS region transcription start site region 113093
Cpgi4526 12 30911305 to 30912396 1091 CpG island CpG island 4526
Tssr116034 12 30911593 to 30911615 22 - TSS region transcription start site region 116034
Tssr113094 12 30911659 to 30911733 74 + TSS region transcription start site region 113094
Sh3yl1 12 30911669 to 30960160 48491 + protein coding gene Sh3 domain YSC-like 1
Tssr113095 12 30911775 to 30911786 11 + TSS region transcription start site region 113095
Tssr113096 12 30912159 to 30912200 41 + TSS region transcription start site region 113096
Tssr113097 12 30953625 to 30953629 4 + TSS region transcription start site region 113097
Cpgi4527 12 31018109 to 31018348 239 CpG island CpG island 4527
Gm6992 12 31018218 to 31019824 1606 + pseudogene predicted gene 6992
Gm18502 12 31030857 to 31031055 198 + pseudogene predicted gene, 18502