Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:2906960-3807728

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107 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm9071 12 3023883 to 3025753 1870 + pseudogene predicted gene 9071
Gm18244 12 3039869 to 3041434 1565 + pseudogene predicted gene, 18244
Gm9072 12 3044729 to 3046242 1513 - pseudogene predicted gene 9072
Gm48310 12 3054927 to 3055401 474 - pseudogene predicted gene, 48310
Gm9075 12 3082667 to 3087041 4374 + pseudogene predicted gene 9075
Cpgi4352 12 3109867 to 3110127 260 CpG island CpG island 4352
Tssr164704 12 3109943 to 3109962 19 + TSS region transcription start site region 164704
Tssr112474 12 3110015 to 3110040 25 + TSS region transcription start site region 112474
Tssr112475 12 3110063 to 3110073 10 + TSS region transcription start site region 112475
Tssr115577 12 3110066 to 3110084 18 - TSS region transcription start site region 115577
Gm9077 12 3171903 to 3201049 29146 + pseudogene predicted gene 9077
Gm18774 12 3216912 to 3228147 11235 + pseudogene predicted gene, 18774
Gm45925 12 3228640 to 3229891 1251 - pseudogene predicted gene, 45925
Cpgi4353 12 3234925 to 3236040 1115 CpG island CpG island 4353
Tssr115578 12 3235290 to 3235297 7 - TSS region transcription start site region 115578
Tssr112476 12 3235489 to 3235522 33 + TSS region transcription start site region 112476
Tssr112477 12 3235734 to 3235801 67 + TSS region transcription start site region 112477
Rab10os 12 3235791 to 3250374 14583 + antisense lncRNA gene RAB10, member RAS oncogene family, opposite strand
Tssr112478 12 3235802 to 3235839 37 + TSS region transcription start site region 112478
9330182L19Rik 12 3242280 to 3243114 834 unclassified gene RIKEN cDNA 9330182L19 gene
Rab10 12 3247428 to 3309969 62541 - protein coding gene RAB10, member RAS oncogene family
Tssr115579 12 3248067 to 3248081 14 - TSS region transcription start site region 115579
Tssr115580 12 3248308 to 3248332 24 - TSS region transcription start site region 115580
Tssr115581 12 3248589 to 3248610 21 - TSS region transcription start site region 115581
Tssr115582 12 3249036 to 3249072 36 - TSS region transcription start site region 115582
Tssr115583 12 3249295 to 3249310 15 - TSS region transcription start site region 115583
Tssr115584 12 3249746 to 3249828 82 - TSS region transcription start site region 115584
Tssr115585 12 3253315 to 3253328 13 - TSS region transcription start site region 115585
Tssr115586 12 3255839 to 3255844 5 - TSS region transcription start site region 115586
Tssr115587 12 3256935 to 3256956 21 - TSS region transcription start site region 115587
Tssr115588 12 3256968 to 3257009 41 - TSS region transcription start site region 115588
Tssr115589 12 3264709 to 3264757 48 - TSS region transcription start site region 115589
Tssr115590 12 3288820 to 3288832 12 - TSS region transcription start site region 115590
Tssr115591 12 3297292 to 3297309 17 - TSS region transcription start site region 115591
Cpgi4354 12 3309081 to 3310600 1519 CpG island CpG island 4354
Tssr115592 12 3309310 to 3309341 31 - TSS region transcription start site region 115592
Tssr115593 12 3309348 to 3309398 50 - TSS region transcription start site region 115593
Tssr3763 12 3309529 to 3309530 1 - TSS region transcription start site region 3763
Tssr3764 12 3309534 to 3309548 14 - TSS region transcription start site region 3764
Tssr115594 12 3309551 to 3309674 123 - TSS region transcription start site region 115594
Tssr115595 12 3309684 to 3309702 18 - TSS region transcription start site region 115595
Tssr115596 12 3309840 to 3309851 11 - TSS region transcription start site region 115596
Tssr115597 12 3309882 to 3309895 13 - TSS region transcription start site region 115597
Tssr115598 12 3309899 to 3309910 11 - TSS region transcription start site region 115598
Tssr115599 12 3309912 to 3309975 63 - TSS region transcription start site region 115599
Tssr115600 12 3341356 to 3341364 8 - TSS region transcription start site region 115600
Gm26520 12 3343816 to 3357153 13337 - lincRNA gene predicted gene, 26520
Tssr112479 12 3345389 to 3345399 10 + TSS region transcription start site region 112479
Tssr115601 12 3347796 to 3347799 3 - TSS region transcription start site region 115601
Tssr112480 12 3350187 to 3350196 9 + TSS region transcription start site region 112480
Tssr112481 12 3350266 to 3350277 11 + TSS region transcription start site region 112481
Cpgi4355 12 3356960 to 3357728 768 CpG island CpG island 4355
Tssr115602 12 3356961 to 3356980 19 - TSS region transcription start site region 115602
Tssr115603 12 3357012 to 3357026 14 - TSS region transcription start site region 115603
Tssr115604 12 3357037 to 3357055 18 - TSS region transcription start site region 115604
I920046F24Rik 12 3363509 to 3365554 2045 - protein coding gene RIKEN cDNA I920046F24 gene
Cpgi4356 12 3364864 to 3366270 1406 CpG island CpG island 4356
Tssr112482 12 3365108 to 3365142 34 + TSS region transcription start site region 112482
Kif3c 12 3365132 to 3406494 41362 + protein coding gene kinesin family member 3C
Tssr112483 12 3365143 to 3365207 64 + TSS region transcription start site region 112483
Tssr112484 12 3365218 to 3365229 11 + TSS region transcription start site region 112484
Tssr112485 12 3365290 to 3365359 69 + TSS region transcription start site region 112485
Tssr112486 12 3365385 to 3365405 20 + TSS region transcription start site region 112486
Gm48512 12 3367248 to 3404066 36818 - antisense lncRNA gene predicted gene, 48512
Gm48511 12 3368429 to 3369959 1530 + unclassified gene predicted gene, 48511
Cpgi4357 12 3388018 to 3388182 164 CpG island CpG island 4357
1110002L01Rik 12 3403883 to 3426747 22864 - antisense lncRNA gene RIKEN cDNA 1110002L01 gene
Cpgi4358 12 3426446 to 3427753 1307 CpG island CpG island 4358
Tssr115605 12 3426630 to 3426664 34 - TSS region transcription start site region 115605
Tssr115606 12 3426676 to 3426691 15 - TSS region transcription start site region 115606
Tssr115607 12 3426700 to 3426782 82 - TSS region transcription start site region 115607
Asxl2 12 3426857 to 3506852 79995 + protein coding gene additional sex combs like 2, transcriptional regulator
Tssr112487 12 3426878 to 3426931 53 + TSS region transcription start site region 112487
Tssr115608 12 3427518 to 3427533 15 - TSS region transcription start site region 115608
Tssr115609 12 3427711 to 3427722 11 - TSS region transcription start site region 115609
Tssr115610 12 3427739 to 3427802 63 - TSS region transcription start site region 115610
Gm31332 12 3438290 to 3442403 4113 + pseudogene predicted gene, 31332
Tssr112488 12 3438355 to 3438358 3 + TSS region transcription start site region 112488
Tssr112489 12 3457560 to 3457588 28 + TSS region transcription start site region 112489
Tssr112490 12 3463372 to 3463386 14 + TSS region transcription start site region 112490
Tssr112491 12 3463400 to 3463409 9 + TSS region transcription start site region 112491
Tssr112492 12 3496348 to 3496395 47 + TSS region transcription start site region 112492
Rps7-ps2 12 3521922 to 3523268 1346 - pseudogene ribosomal protein S7, pseudogene 2
Cpgi4359 12 3523501 to 3523674 173 CpG island CpG island 4359
Cpgi4360 12 3571905 to 3573188 1283 CpG island CpG island 4360
Tssr112493 12 3572178 to 3572209 31 + TSS region transcription start site region 112493
Tssr112494 12 3572379 to 3572524 145 + TSS region transcription start site region 112494
Dtnb 12 3572381 to 3781796 209415 + protein coding gene dystrobrevin, beta
Tssr112495 12 3572528 to 3572548 20 + TSS region transcription start site region 112495
Gm9039 12 3613954 to 3615357 1403 - pseudogene predicted gene 9039
Tssr112496 12 3643943 to 3643986 43 + TSS region transcription start site region 112496
Tssr115611 12 3646390 to 3646400 10 - TSS region transcription start site region 115611
Gm26050 12 3699178 to 3699240 62 + miRNA gene predicted gene, 26050
Tssr112497 12 3732186 to 3732189 3 + TSS region transcription start site region 112497
Dtnbos 12 3752543 to 3762146 9603 - antisense lncRNA gene dystrobrevin, beta, opposite strand
Gm18028 12 3771032 to 3771623 591 + pseudogene predicted gene, 18028
Tssr112498 12 3780534 to 3780549 15 + TSS region transcription start site region 112498
Cpgi4361 12 3791925 to 3792195 270 CpG island CpG island 4361
Cpgi4362 12 3805916 to 3808856 2940 CpG island CpG island 4362
Tssr112499 12 3806003 to 3806031 28 + TSS region transcription start site region 112499
Dnmt3a 12 3806007 to 3914443 108436 + protein coding gene DNA methyltransferase 3A
Tssr112500 12 3806513 to 3806527 14 + TSS region transcription start site region 112500
Tssr112501 12 3806536 to 3806571 35 + TSS region transcription start site region 112501
Tssr112502 12 3806962 to 3806973 11 + TSS region transcription start site region 112502
Tssr112503 12 3807001 to 3807016 15 + TSS region transcription start site region 112503
Tssr112504 12 3807017 to 3807063 46 + TSS region transcription start site region 112504
Tssr112505 12 3807076 to 3807086 10 + TSS region transcription start site region 112505