Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:28754487-29456850

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29 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Eipr1 12 28751798 to 28867494 115696 + protein coding gene EARP complex and GARP complex interacting protein 1
Gm46345 12 28769332 to 28777111 7779 + protein coding gene predicted gene, 46345
Tssr113053 12 28771497 to 28771503 6 + TSS region transcription start site region 113053
Gm48904 12 28789669 to 28792612 2943 + unclassified gene predicted gene, 48904
Tssr3815 12 28800697 to 28800709 12 + TSS region transcription start site region 3815
Tssr113054 12 28802221 to 28802225 4 + TSS region transcription start site region 113054
Tssr116022 12 28808691 to 28808712 21 - TSS region transcription start site region 116022
Gm48905 12 28810138 to 28811191 1053 + sense intronic lncRNA gene predicted gene, 48905
Tssr113055 12 28834701 to 28834714 13 + TSS region transcription start site region 113055
Gm48080 12 28886230 to 28886382 152 - pseudogene predicted gene, 48080
Tssr116023 12 28886413 to 28886415 2 - TSS region transcription start site region 116023
Tssr113056 12 28898602 to 28898649 47 + TSS region transcription start site region 113056
Gm31508 12 28910229 to 29041874 131645 + lincRNA gene predicted gene, 31508
Tssr113057 12 29002869 to 29002873 4 + TSS region transcription start site region 113057
Gm23342 12 29035180 to 29035294 114 - rRNA gene predicted gene, 23342
Tssr116024 12 29059622 to 29059624 2 - TSS region transcription start site region 116024
4833405L11Rik 12 29104487 to 29106850 2363 - lincRNA gene RIKEN cDNA 4833405L11 gene
Tssr113058 12 29123296 to 29123338 42 + TSS region transcription start site region 113058
Gm31333 12 29139167 to 29199768 60601 + lincRNA gene predicted gene, 31333
Gm31569 12 29205647 to 29278718 73071 + lncRNA gene predicted gene, 31569
D12Mit85 12 29208693 to 29208864 171 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 85
Cpgi4516 12 29279855 to 29280044 189 CpG island CpG island 4516
Tssr116025 12 29291010 to 29291042 32 - TSS region transcription start site region 116025
D12Mit107 12 29315526 to 29315790 264 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 107
Gm6989 12 29316915 to 29317568 653 - pseudogene predicted gene 6989
slwr 12 29342476 to 29342615 139 QTL slowlearner
D12Mit171 12 29342476 to 29342615 139 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 171
Tssr3816 12 29345939 to 29345940 1 - TSS region transcription start site region 3816
Gm31650 12 29439514 to 29458362 18848 + lncRNA gene predicted gene, 31650