Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:28711010-29871042

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69 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Trappc12 12 28690628 to 28750472 59844 - protein coding gene trafficking protein particle complex 12
Gm31269 12 28740563 to 28745568 5005 + lncRNA gene predicted gene, 31269
Cpgi4514 12 28750076 to 28750548 472 CpG island CpG island 4514
Tssr116020 12 28750365 to 28750418 53 - TSS region transcription start site region 116020
Tssr116021 12 28750425 to 28750474 49 - TSS region transcription start site region 116021
Cpgi4515 12 28751565 to 28752228 663 CpG island CpG island 4515
Eipr1 12 28751798 to 28867494 115696 + protein coding gene EARP complex and GARP complex interacting protein 1
Tssr113052 12 28751798 to 28751868 70 + TSS region transcription start site region 113052
Gm46345 12 28769332 to 28777111 7779 + protein coding gene predicted gene, 46345
Tssr113053 12 28771497 to 28771503 6 + TSS region transcription start site region 113053
Gm48904 12 28789669 to 28792612 2943 + unclassified gene predicted gene, 48904
Tssr3815 12 28800697 to 28800709 12 + TSS region transcription start site region 3815
Tssr113054 12 28802221 to 28802225 4 + TSS region transcription start site region 113054
Tssr116022 12 28808691 to 28808712 21 - TSS region transcription start site region 116022
Gm48905 12 28810138 to 28811191 1053 + sense intronic lncRNA gene predicted gene, 48905
Tssr113055 12 28834701 to 28834714 13 + TSS region transcription start site region 113055
Gm48080 12 28886230 to 28886382 152 - pseudogene predicted gene, 48080
Tssr116023 12 28886413 to 28886415 2 - TSS region transcription start site region 116023
Tssr113056 12 28898602 to 28898649 47 + TSS region transcription start site region 113056
Gm31508 12 28910229 to 29041874 131645 + lincRNA gene predicted gene, 31508
Tssr113057 12 29002869 to 29002873 4 + TSS region transcription start site region 113057
Gm23342 12 29035180 to 29035294 114 - rRNA gene predicted gene, 23342
Tssr116024 12 29059622 to 29059624 2 - TSS region transcription start site region 116024
4833405L11Rik 12 29104487 to 29106850 2363 - lincRNA gene RIKEN cDNA 4833405L11 gene
Tssr113058 12 29123296 to 29123338 42 + TSS region transcription start site region 113058
Gm31333 12 29139167 to 29199768 60601 + lincRNA gene predicted gene, 31333
Gm31569 12 29205647 to 29278718 73071 + lncRNA gene predicted gene, 31569
D12Mit85 12 29208693 to 29208864 171 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 85
Cpgi4516 12 29279855 to 29280044 189 CpG island CpG island 4516
Tssr116025 12 29291010 to 29291042 32 - TSS region transcription start site region 116025
D12Mit107 12 29315526 to 29315790 264 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 107
Gm6989 12 29316915 to 29317568 653 - pseudogene predicted gene 6989
D12Mit171 12 29342476 to 29342615 139 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 171
slwr 12 29342476 to 29342615 139 QTL slowlearner
Tssr3816 12 29345939 to 29345940 1 - TSS region transcription start site region 3816
Gm31650 12 29439514 to 29458362 18848 + lncRNA gene predicted gene, 31650
Gm20208 12 29526958 to 29532197 5239 - lncRNA gene predicted gene, 20208
Tssr3817 12 29528117 to 29528133 16 - TSS region transcription start site region 3817
Tssr113059 12 29528382 to 29528468 86 + TSS region transcription start site region 113059
Myt1l 12 29528384 to 29923213 394829 + protein coding gene myelin transcription factor 1-like
Tssr113060 12 29528471 to 29528498 27 + TSS region transcription start site region 113060
Tssr113061 12 29528527 to 29528549 22 + TSS region transcription start site region 113061
Tssr113062 12 29528639 to 29528649 10 + TSS region transcription start site region 113062
Tssr116026 12 29531107 to 29531143 36 - TSS region transcription start site region 116026
Tssr113063 12 29533280 to 29533291 11 + TSS region transcription start site region 113063
Tssr113064 12 29533292 to 29533315 23 + TSS region transcription start site region 113064
Tssr113065 12 29533351 to 29533364 13 + TSS region transcription start site region 113065
Tssr113066 12 29533428 to 29533446 18 + TSS region transcription start site region 113066
Tssr113067 12 29533451 to 29533467 16 + TSS region transcription start site region 113067
Tssr113068 12 29533477 to 29533492 15 + TSS region transcription start site region 113068
Tssr113069 12 29534561 to 29534641 80 + TSS region transcription start site region 113069
Tssr113070 12 29534716 to 29534725 9 + TSS region transcription start site region 113070
Cpgi4517 12 29534749 to 29535137 388 CpG island CpG island 4517
Tssr113071 12 29534847 to 29534913 66 + TSS region transcription start site region 113071
Tssr113072 12 29535181 to 29535205 24 + TSS region transcription start site region 113072
Tssr113073 12 29535209 to 29535237 28 + TSS region transcription start site region 113073
Tssr113074 12 29566749 to 29566760 11 + TSS region transcription start site region 113074
C630031E19Rik 12 29675630 to 29686445 10815 - antisense lncRNA gene RIKEN cDNA C630031E19 gene
Tssr113075 12 29724422 to 29724430 8 + TSS region transcription start site region 113075
Tssr113076 12 29732907 to 29732910 3 + TSS region transcription start site region 113076
Tssr113077 12 29783625 to 29783642 17 + TSS region transcription start site region 113077
Tssr113078 12 29783845 to 29783865 20 + TSS region transcription start site region 113078
Tssr113079 12 29800055 to 29800072 17 + TSS region transcription start site region 113079
D12Mit1006 12 29800083 to 29800192 109 DNA segment DNA Segment, Chr 12, Massachusetts Institute of Technology 1006
D12Mit1007 12 29800166 to 29800310 144 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 1007
C030014C12Rik 12 29800368 to 29801177 809 unclassified gene RIKEN cDNA C030014C12 gene
Tssr113080 12 29811568 to 29811583 15 + TSS region transcription start site region 113080
Cpgi4518 12 29840130 to 29840295 165 CpG island CpG island 4518
Tssr113081 12 29840207 to 29840250 43 + TSS region transcription start site region 113081