Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:28580138-29041191

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54 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Allc 12 28553755 to 28582523 28768 - protein coding gene allantoicase
Tssr116005 12 28582517 to 28582533 16 - TSS region transcription start site region 116005
Tssr116006 12 28582538 to 28582559 21 - TSS region transcription start site region 116006
Colec11 12 28594173 to 28623377 29204 - protein coding gene collectin sub-family member 11
Cpgi4509 12 28594764 to 28595065 301 CpG island CpG island 4509
Tssr116007 12 28623282 to 28623296 14 - TSS region transcription start site region 116007
Tssr116008 12 28623313 to 28623329 16 - TSS region transcription start site region 116008
Tssr116009 12 28623335 to 28623346 11 - TSS region transcription start site region 116009
Tssr116010 12 28623350 to 28623371 21 - TSS region transcription start site region 116010
Tssr116011 12 28623372 to 28623394 22 - TSS region transcription start site region 116011
Tssr116012 12 28623401 to 28623414 13 - TSS region transcription start site region 116012
Tssr116013 12 28623456 to 28623463 7 - TSS region transcription start site region 116013
Rps7 12 28630854 to 28635953 5099 - protein coding gene ribosomal protein S7
Tssr116014 12 28635233 to 28635240 7 - TSS region transcription start site region 116014
Cpgi4510 12 28635265 to 28636216 951 CpG island CpG island 4510
Tssr116015 12 28635832 to 28635837 5 - TSS region transcription start site region 116015
Tssr116016 12 28635843 to 28635865 22 - TSS region transcription start site region 116016
Tssr116017 12 28635867 to 28635887 20 - TSS region transcription start site region 116017
Tssr116018 12 28635891 to 28635905 14 - TSS region transcription start site region 116018
Tssr116019 12 28635914 to 28635952 38 - TSS region transcription start site region 116019
Cpgi4511 12 28649321 to 28649957 636 CpG island CpG island 4511
Tssr113046 12 28649601 to 28649649 48 + TSS region transcription start site region 113046
Rnaseh1 12 28649602 to 28659589 9987 + protein coding gene ribonuclease H1
Tssr113047 12 28649652 to 28649670 18 + TSS region transcription start site region 113047
Tssr113048 12 28653899 to 28653903 4 + TSS region transcription start site region 113048
Cpgi4512 12 28674985 to 28675895 910 CpG island CpG island 4512
Tssr113049 12 28675201 to 28675212 11 + TSS region transcription start site region 113049
Tssr113050 12 28675220 to 28675239 19 + TSS region transcription start site region 113050
Adi1 12 28675231 to 28682175 6944 + protein coding gene acireductone dioxygenase 1
Tssr113051 12 28675245 to 28675254 9 + TSS region transcription start site region 113051
Mir6937 12 28679325 to 28679389 64 + miRNA gene microRNA 6937
Trappc12 12 28690628 to 28750472 59844 - protein coding gene trafficking protein particle complex 12
Cpgi4513 12 28700602 to 28700981 379 CpG island CpG island 4513
Gm31269 12 28740563 to 28745568 5005 + lncRNA gene predicted gene, 31269
Cpgi4514 12 28750076 to 28750548 472 CpG island CpG island 4514
Tssr116020 12 28750365 to 28750418 53 - TSS region transcription start site region 116020
Tssr116021 12 28750425 to 28750474 49 - TSS region transcription start site region 116021
Cpgi4515 12 28751565 to 28752228 663 CpG island CpG island 4515
Eipr1 12 28751798 to 28867494 115696 + protein coding gene EARP complex and GARP complex interacting protein 1
Tssr113052 12 28751798 to 28751868 70 + TSS region transcription start site region 113052
Gm46345 12 28769332 to 28777111 7779 + protein coding gene predicted gene, 46345
Tssr113053 12 28771497 to 28771503 6 + TSS region transcription start site region 113053
Gm48904 12 28789669 to 28792612 2943 + unclassified gene predicted gene, 48904
Tssr3815 12 28800697 to 28800709 12 + TSS region transcription start site region 3815
Tssr113054 12 28802221 to 28802225 4 + TSS region transcription start site region 113054
Tssr116022 12 28808691 to 28808712 21 - TSS region transcription start site region 116022
Gm48905 12 28810138 to 28811191 1053 + sense intronic lncRNA gene predicted gene, 48905
Tssr113055 12 28834701 to 28834714 13 + TSS region transcription start site region 113055
Gm48080 12 28886230 to 28886382 152 - pseudogene predicted gene, 48080
Tssr116023 12 28886413 to 28886415 2 - TSS region transcription start site region 116023
Tssr113056 12 28898602 to 28898649 47 + TSS region transcription start site region 113056
Gm31508 12 28910229 to 29041874 131645 + lincRNA gene predicted gene, 31508
Tssr113057 12 29002869 to 29002873 4 + TSS region transcription start site region 113057
Gm23342 12 29035180 to 29035294 114 - rRNA gene predicted gene, 23342