Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:28021798-29597494

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99 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm46326 12 28054041 to 28056040 1999 + lncRNA gene predicted gene, 46326
Gm25923 12 28060391 to 28060528 137 - rRNA gene predicted gene, 25923
Gm47872 12 28249759 to 28339409 89650 - lincRNA gene predicted gene, 47872
Gm47871 12 28320635 to 28321058 423 - lincRNA gene predicted gene, 47871
Gm25564 12 28350263 to 28350394 131 + snoRNA gene predicted gene, 25564
Dcdc2c 12 28437795 to 28552399 114604 - protein coding gene doublecortin domain containing 2C
Gm47878 12 28523050 to 28523356 306 + pseudogene predicted gene, 47878
D12Mit1004 12 28543916 to 28544031 115 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 1004
Cpgi4508 12 28551895 to 28552499 604 CpG island CpG island 4508
Tssr116004 12 28552393 to 28552404 11 - TSS region transcription start site region 116004
Allc 12 28553755 to 28582523 28768 - protein coding gene allantoicase
Tssr116005 12 28582517 to 28582533 16 - TSS region transcription start site region 116005
Tssr116006 12 28582538 to 28582559 21 - TSS region transcription start site region 116006
Colec11 12 28594173 to 28623377 29204 - protein coding gene collectin sub-family member 11
Cpgi4509 12 28594764 to 28595065 301 CpG island CpG island 4509
Tssr116007 12 28623282 to 28623296 14 - TSS region transcription start site region 116007
Tssr116008 12 28623313 to 28623329 16 - TSS region transcription start site region 116008
Tssr116009 12 28623335 to 28623346 11 - TSS region transcription start site region 116009
Tssr116010 12 28623350 to 28623371 21 - TSS region transcription start site region 116010
Tssr116011 12 28623372 to 28623394 22 - TSS region transcription start site region 116011
Tssr116012 12 28623401 to 28623414 13 - TSS region transcription start site region 116012
Tssr116013 12 28623456 to 28623463 7 - TSS region transcription start site region 116013
Rps7 12 28630854 to 28635953 5099 - protein coding gene ribosomal protein S7
Tssr116014 12 28635233 to 28635240 7 - TSS region transcription start site region 116014
Cpgi4510 12 28635265 to 28636216 951 CpG island CpG island 4510
Tssr116015 12 28635832 to 28635837 5 - TSS region transcription start site region 116015
Tssr116016 12 28635843 to 28635865 22 - TSS region transcription start site region 116016
Tssr116017 12 28635867 to 28635887 20 - TSS region transcription start site region 116017
Tssr116018 12 28635891 to 28635905 14 - TSS region transcription start site region 116018
Tssr116019 12 28635914 to 28635952 38 - TSS region transcription start site region 116019
Cpgi4511 12 28649321 to 28649957 636 CpG island CpG island 4511
Tssr113046 12 28649601 to 28649649 48 + TSS region transcription start site region 113046
Rnaseh1 12 28649602 to 28659589 9987 + protein coding gene ribonuclease H1
Tssr113047 12 28649652 to 28649670 18 + TSS region transcription start site region 113047
Tssr113048 12 28653899 to 28653903 4 + TSS region transcription start site region 113048
Cpgi4512 12 28674985 to 28675895 910 CpG island CpG island 4512
Tssr113049 12 28675201 to 28675212 11 + TSS region transcription start site region 113049
Tssr113050 12 28675220 to 28675239 19 + TSS region transcription start site region 113050
Adi1 12 28675231 to 28682175 6944 + protein coding gene acireductone dioxygenase 1
Tssr113051 12 28675245 to 28675254 9 + TSS region transcription start site region 113051
Mir6937 12 28679325 to 28679389 64 + miRNA gene microRNA 6937
Trappc12 12 28690628 to 28750472 59844 - protein coding gene trafficking protein particle complex 12
Cpgi4513 12 28700602 to 28700981 379 CpG island CpG island 4513
Gm31269 12 28740563 to 28745568 5005 + lncRNA gene predicted gene, 31269
Cpgi4514 12 28750076 to 28750548 472 CpG island CpG island 4514
Tssr116020 12 28750365 to 28750418 53 - TSS region transcription start site region 116020
Tssr116021 12 28750425 to 28750474 49 - TSS region transcription start site region 116021
Cpgi4515 12 28751565 to 28752228 663 CpG island CpG island 4515
Tssr113052 12 28751798 to 28751868 70 + TSS region transcription start site region 113052
Eipr1 12 28751798 to 28867494 115696 + protein coding gene EARP complex and GARP complex interacting protein 1
Gm46345 12 28769332 to 28777111 7779 + protein coding gene predicted gene, 46345
Tssr113053 12 28771497 to 28771503 6 + TSS region transcription start site region 113053
Gm48904 12 28789669 to 28792612 2943 + unclassified gene predicted gene, 48904
Tssr3815 12 28800697 to 28800709 12 + TSS region transcription start site region 3815
Tssr113054 12 28802221 to 28802225 4 + TSS region transcription start site region 113054
Tssr116022 12 28808691 to 28808712 21 - TSS region transcription start site region 116022
Gm48905 12 28810138 to 28811191 1053 + sense intronic lncRNA gene predicted gene, 48905
Tssr113055 12 28834701 to 28834714 13 + TSS region transcription start site region 113055
Gm48080 12 28886230 to 28886382 152 - pseudogene predicted gene, 48080
Tssr116023 12 28886413 to 28886415 2 - TSS region transcription start site region 116023
Tssr113056 12 28898602 to 28898649 47 + TSS region transcription start site region 113056
Gm31508 12 28910229 to 29041874 131645 + lincRNA gene predicted gene, 31508
Tssr113057 12 29002869 to 29002873 4 + TSS region transcription start site region 113057
Gm23342 12 29035180 to 29035294 114 - rRNA gene predicted gene, 23342
Tssr116024 12 29059622 to 29059624 2 - TSS region transcription start site region 116024
4833405L11Rik 12 29104487 to 29106850 2363 - lincRNA gene RIKEN cDNA 4833405L11 gene
Tssr113058 12 29123296 to 29123338 42 + TSS region transcription start site region 113058
Gm31333 12 29139167 to 29199768 60601 + lincRNA gene predicted gene, 31333
Gm31569 12 29205647 to 29278718 73071 + lncRNA gene predicted gene, 31569
D12Mit85 12 29208693 to 29208864 171 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 85
Cpgi4516 12 29279855 to 29280044 189 CpG island CpG island 4516
Tssr116025 12 29291010 to 29291042 32 - TSS region transcription start site region 116025
D12Mit107 12 29315526 to 29315790 264 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 107
Gm6989 12 29316915 to 29317568 653 - pseudogene predicted gene 6989
D12Mit171 12 29342476 to 29342615 139 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 171
slwr 12 29342476 to 29342615 139 QTL slowlearner
Tssr3816 12 29345939 to 29345940 1 - TSS region transcription start site region 3816
Gm31650 12 29439514 to 29458362 18848 + lncRNA gene predicted gene, 31650
Gm20208 12 29526958 to 29532197 5239 - lncRNA gene predicted gene, 20208
Tssr3817 12 29528117 to 29528133 16 - TSS region transcription start site region 3817
Tssr113059 12 29528382 to 29528468 86 + TSS region transcription start site region 113059
Myt1l 12 29528384 to 29923213 394829 + protein coding gene myelin transcription factor 1-like
Tssr113060 12 29528471 to 29528498 27 + TSS region transcription start site region 113060
Tssr113061 12 29528527 to 29528549 22 + TSS region transcription start site region 113061
Tssr113062 12 29528639 to 29528649 10 + TSS region transcription start site region 113062
Tssr116026 12 29531107 to 29531143 36 - TSS region transcription start site region 116026
Tssr113063 12 29533280 to 29533291 11 + TSS region transcription start site region 113063
Tssr113064 12 29533292 to 29533315 23 + TSS region transcription start site region 113064
Tssr113065 12 29533351 to 29533364 13 + TSS region transcription start site region 113065
Tssr113066 12 29533428 to 29533446 18 + TSS region transcription start site region 113066
Tssr113067 12 29533451 to 29533467 16 + TSS region transcription start site region 113067
Tssr113068 12 29533477 to 29533492 15 + TSS region transcription start site region 113068
Tssr113069 12 29534561 to 29534641 80 + TSS region transcription start site region 113069
Tssr113070 12 29534716 to 29534725 9 + TSS region transcription start site region 113070
Cpgi4517 12 29534749 to 29535137 388 CpG island CpG island 4517
Tssr113071 12 29534847 to 29534913 66 + TSS region transcription start site region 113071
Tssr113072 12 29535181 to 29535205 24 + TSS region transcription start site region 113072
Tssr113073 12 29535209 to 29535237 28 + TSS region transcription start site region 113073
Tssr113074 12 29566749 to 29566760 11 + TSS region transcription start site region 113074