Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:24998936-27888945

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259 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Kidins220 12 24974925 to 25063152 88227 + protein coding gene kinase D-interacting substrate 220
Tssr115882 12 25002878 to 25002882 4 - TSS region transcription start site region 115882
Tssr112976 12 25038355 to 25038380 25 + TSS region transcription start site region 112976
Tssr112977 12 25040095 to 25040102 7 + TSS region transcription start site region 112977
Tssr112978 12 25042662 to 25042666 4 + TSS region transcription start site region 112978
2900003A17Rik 12 25061783 to 25062313 530 unclassified gene RIKEN cDNA 2900003A17 gene
Gm47701 12 25064692 to 25067478 2786 + lincRNA gene predicted gene, 47701
Cpgi4499 12 25092227 to 25093034 807 CpG island CpG island 4499
Id2 12 25093799 to 25096092 2293 - protein coding gene inhibitor of DNA binding 2
Tssr115883 12 25094528 to 25094530 2 - TSS region transcription start site region 115883
Cpgi4500 12 25095487 to 25096761 1274 CpG island CpG island 4500
Tssr112979 12 25095717 to 25095739 22 + TSS region transcription start site region 112979
Tssr115884 12 25095721 to 25095793 72 - TSS region transcription start site region 115884
Tssr115885 12 25096080 to 25096096 16 - TSS region transcription start site region 115885
Tssr112980 12 25096437 to 25096449 12 + TSS region transcription start site region 112980
Tssr112981 12 25096452 to 25096487 35 + TSS region transcription start site region 112981
Tssr115886 12 25097239 to 25097283 44 - TSS region transcription start site region 115886
Tssr112982 12 25097428 to 25097439 11 + TSS region transcription start site region 112982
Cpgi4501 12 25098331 to 25099528 1197 CpG island CpG island 4501
Tssr112983 12 25098997 to 25099028 31 + TSS region transcription start site region 112983
Cpgi4502 12 25099582 to 25100066 484 CpG island CpG island 4502
Tssr112984 12 25099691 to 25099719 28 + TSS region transcription start site region 112984
Tssr112985 12 25099826 to 25099836 10 + TSS region transcription start site region 112985
Cpgi4503 12 25100591 to 25101300 709 CpG island CpG island 4503
Tssr115887 12 25101195 to 25101226 31 - TSS region transcription start site region 115887
Gm17746 12 25129174 to 25132274 3100 + lincRNA gene predicted gene, 17746
Gm36287 12 25150915 to 25209377 58462 + lincRNA gene predicted gene, 36287
Gm47705 12 25181768 to 25189630 7862 + lincRNA gene predicted gene, 47705
Gm36496 12 25187505 to 25191001 3496 - lncRNA gene predicted gene, 36496
Tssr115888 12 25189095 to 25189101 6 - TSS region transcription start site region 115888
Tssr115889 12 25189580 to 25189597 17 - TSS region transcription start site region 115889
Tssr115890 12 25189602 to 25189614 12 - TSS region transcription start site region 115890
Tssr115891 12 25189661 to 25189673 12 - TSS region transcription start site region 115891
Gm36441 12 25207602 to 25214605 7003 - lncRNA gene predicted gene, 36441
Tssr115892 12 25241989 to 25242024 35 - TSS region transcription start site region 115892
Tssr112986 12 25254763 to 25254804 41 + TSS region transcription start site region 112986
Tssr112987 12 25254951 to 25254963 12 + TSS region transcription start site region 112987
Tssr115893 12 25272832 to 25272852 20 - TSS region transcription start site region 115893
Gm19340 12 25282595 to 25282939 344 + pseudogene predicted gene, 19340
Tssr112988 12 25285098 to 25285105 7 + TSS region transcription start site region 112988
Gm47713 12 25300071 to 25304613 4542 - lincRNA gene predicted gene, 47713
D12Mit105 12 25302445 to 25302582 137 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 105
Cd4ts5 12 25302445 to 25302582 137 QTL CD4 T cell subset 5
Gm46343 12 25303617 to 25311245 7628 + lncRNA gene predicted gene, 46343
Tssr112989 12 25303753 to 25303758 5 + TSS region transcription start site region 112989
Tssr112990 12 25316186 to 25316198 12 + TSS region transcription start site region 112990
Tssr112991 12 25318137 to 25318148 11 + TSS region transcription start site region 112991
Tssr112992 12 25318150 to 25318163 13 + TSS region transcription start site region 112992
Tssr115894 12 25319984 to 25319992 8 - TSS region transcription start site region 115894
Tssr112993 12 25320802 to 25320811 9 + TSS region transcription start site region 112993
Tssr112994 12 25320812 to 25320824 12 + TSS region transcription start site region 112994
Tssr112995 12 25335325 to 25335338 13 + TSS region transcription start site region 112995
Gm36723 12 25355902 to 25471867 115965 + lincRNA gene predicted gene, 36723
Tssr112996 12 25381959 to 25381972 13 + TSS region transcription start site region 112996
Tssr3813 12 25382014 to 25382023 9 + TSS region transcription start site region 3813
Tssr115895 12 25396859 to 25396860 1 - TSS region transcription start site region 115895
Gm36886 12 25474675 to 25480258 5583 + lncRNA gene predicted gene, 36886
Gm22527 12 25687801 to 25687906 105 + rRNA gene predicted gene, 22527
Gm9321 12 25819764 to 25820541 777 - pseudogene predicted gene 9321
Gm47733 12 25871153 to 25871561 408 + lincRNA gene predicted gene, 47733
Gm29835 12 25979043 to 25991775 12732 + lncRNA gene predicted gene, 29835
Gm29687 12 26091962 to 26210505 118543 - lincRNA gene predicted gene, 29687
Gm47750 12 26150316 to 26150513 197 + pseudogene predicted gene, 47750
Tssr115896 12 26187553 to 26187582 29 - TSS region transcription start site region 115896
Tssr3814 12 26187733 to 26187740 7 + TSS region transcription start site region 3814
4930480M12Rik 12 26211267 to 26240707 29440 + lincRNA gene RIKEN cDNA 4930480M12 gene
D12Mit83 12 26235177 to 26235321 144 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 83
Gm29968 12 26235530 to 26252545 17015 - lincRNA gene predicted gene, 29968
Rnf144a 12 26306794 to 26415320 108526 - protein coding gene ring finger protein 144A
Tssr115897 12 26346589 to 26346608 19 - TSS region transcription start site region 115897
4930549C15Rik 12 26346717 to 26371748 25031 + antisense lncRNA gene RIKEN cDNA 4930549C15 gene
Tssr112997 12 26346731 to 26346743 12 + TSS region transcription start site region 112997
Tssr115898 12 26413998 to 26414013 15 - TSS region transcription start site region 115898
Cpgi4504 12 26414421 to 26415663 1242 CpG island CpG island 4504
Mir6538 12 26414901 to 26415010 109 - miRNA gene microRNA 6538
Tssr115899 12 26415199 to 26415214 15 - TSS region transcription start site region 115899
Tssr115900 12 26415228 to 26415242 14 - TSS region transcription start site region 115900
Tssr115901 12 26415257 to 26415303 46 - TSS region transcription start site region 115901
Gm47799 12 26431153 to 26436819 5666 - pseudogene predicted gene, 47799
Fcsa7 12 26441005 to 26441113 108 QTL femoral cross-sectional area 7
D12Mit219 12 26441005 to 26441113 108 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 219
Rsad2 12 26442746 to 26456452 13706 - protein coding gene radical S-adenosyl methionine domain containing 2
Tssr115902 12 26442857 to 26442870 13 - TSS region transcription start site region 115902
Tssr115903 12 26443189 to 26443200 11 - TSS region transcription start site region 115903
Tssr115904 12 26443206 to 26443224 18 - TSS region transcription start site region 115904
Tssr115905 12 26443511 to 26443522 11 - TSS region transcription start site region 115905
Tssr115906 12 26443639 to 26443642 3 - TSS region transcription start site region 115906
Tssr115907 12 26443694 to 26443701 7 - TSS region transcription start site region 115907
Tssr115908 12 26443734 to 26443745 11 - TSS region transcription start site region 115908
Tssr112998 12 26443741 to 26443753 12 + TSS region transcription start site region 112998
Tssr112999 12 26443788 to 26443818 30 + TSS region transcription start site region 112999
Tssr115909 12 26443820 to 26443829 9 - TSS region transcription start site region 115909
Tssr115910 12 26443872 to 26443883 11 - TSS region transcription start site region 115910
Tssr113000 12 26443912 to 26443919 7 + TSS region transcription start site region 113000
Tssr115911 12 26443922 to 26443931 9 - TSS region transcription start site region 115911
Tssr115912 12 26443936 to 26443945 9 - TSS region transcription start site region 115912
Tssr115913 12 26443971 to 26443980 9 - TSS region transcription start site region 115913
Tssr115914 12 26444023 to 26444028 5 - TSS region transcription start site region 115914
Tssr115915 12 26444052 to 26444071 19 - TSS region transcription start site region 115915
Tssr115916 12 26444109 to 26444112 3 - TSS region transcription start site region 115916
Tssr115917 12 26444155 to 26444162 7 - TSS region transcription start site region 115917
Tssr115918 12 26444174 to 26444177 3 - TSS region transcription start site region 115918
Tssr115919 12 26444201 to 26444208 7 - TSS region transcription start site region 115919
Tssr115920 12 26444228 to 26444240 12 - TSS region transcription start site region 115920
Tssr113001 12 26444386 to 26444406 20 + TSS region transcription start site region 113001
Tssr113002 12 26444410 to 26444430 20 + TSS region transcription start site region 113002
Tssr113003 12 26444485 to 26444518 33 + TSS region transcription start site region 113003
Tssr115921 12 26444533 to 26444616 83 - TSS region transcription start site region 115921
Tssr113004 12 26444545 to 26444569 24 + TSS region transcription start site region 113004
Tssr113005 12 26444571 to 26444578 7 + TSS region transcription start site region 113005
Tssr115922 12 26444629 to 26444641 12 - TSS region transcription start site region 115922
Tssr115923 12 26444712 to 26444734 22 - TSS region transcription start site region 115923
Tssr115924 12 26444783 to 26444794 11 - TSS region transcription start site region 115924
Tssr115925 12 26444798 to 26444809 11 - TSS region transcription start site region 115925
Tssr113006 12 26444934 to 26444945 11 + TSS region transcription start site region 113006
Tssr113007 12 26445018 to 26445035 17 + TSS region transcription start site region 113007
Tssr115926 12 26445147 to 26445160 13 - TSS region transcription start site region 115926
Tssr113008 12 26445186 to 26445203 17 + TSS region transcription start site region 113008
Tssr115927 12 26445191 to 26445201 10 - TSS region transcription start site region 115927
Tssr113009 12 26445204 to 26445218 14 + TSS region transcription start site region 113009
Tssr113010 12 26445354 to 26445408 54 + TSS region transcription start site region 113010
Tssr115928 12 26447172 to 26447196 24 - TSS region transcription start site region 115928
Tssr115929 12 26447202 to 26447210 8 - TSS region transcription start site region 115929
Tssr115930 12 26447478 to 26447495 17 - TSS region transcription start site region 115930
Tssr115931 12 26447516 to 26447527 11 - TSS region transcription start site region 115931
Tssr115932 12 26447923 to 26447943 20 - TSS region transcription start site region 115932
Tssr115933 12 26447947 to 26447958 11 - TSS region transcription start site region 115933
Tssr115934 12 26448154 to 26448175 21 - TSS region transcription start site region 115934
Tssr115935 12 26448200 to 26448225 25 - TSS region transcription start site region 115935
Tssr115936 12 26448375 to 26448389 14 - TSS region transcription start site region 115936
Tssr115937 12 26448573 to 26448586 13 - TSS region transcription start site region 115937
Tssr115938 12 26448611 to 26448644 33 - TSS region transcription start site region 115938
Tssr113011 12 26448658 to 26448677 19 + TSS region transcription start site region 113011
Tssr115939 12 26448667 to 26448681 14 - TSS region transcription start site region 115939
Tssr115940 12 26448682 to 26448713 31 - TSS region transcription start site region 115940
Tssr115941 12 26448716 to 26448742 26 - TSS region transcription start site region 115941
Tssr115942 12 26450537 to 26450549 12 - TSS region transcription start site region 115942
Tssr115943 12 26450579 to 26450658 79 - TSS region transcription start site region 115943
Tssr115944 12 26450675 to 26450684 9 - TSS region transcription start site region 115944
Tssr115945 12 26450715 to 26450778 63 - TSS region transcription start site region 115945
Tssr115946 12 26453722 to 26453733 11 - TSS region transcription start site region 115946
Tssr115947 12 26454048 to 26454160 112 - TSS region transcription start site region 115947
Tssr115948 12 26455206 to 26455224 18 - TSS region transcription start site region 115948
Tssr115949 12 26455602 to 26455623 21 - TSS region transcription start site region 115949
Tssr115950 12 26455726 to 26455737 11 - TSS region transcription start site region 115950
Tssr113012 12 26456116 to 26456127 11 + TSS region transcription start site region 113012
Tssr115951 12 26456423 to 26456440 17 - TSS region transcription start site region 115951
Cpgi4505 12 26469149 to 26470088 939 CpG island CpG island 4505
Tssr115952 12 26469152 to 26469163 11 - TSS region transcription start site region 115952
Cmpk2 12 26469212 to 26479837 10625 + protein coding gene cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial
Tssr115953 12 26469236 to 26469247 11 - TSS region transcription start site region 115953
Tssr113013 12 26469373 to 26469397 24 + TSS region transcription start site region 113013
Tssr113014 12 26469906 to 26469981 75 + TSS region transcription start site region 113014
Tssr113015 12 26470349 to 26470360 11 + TSS region transcription start site region 113015
Tssr113016 12 26470427 to 26470456 29 + TSS region transcription start site region 113016
Tssr113017 12 26470507 to 26470511 4 + TSS region transcription start site region 113017
Tssr113018 12 26472619 to 26472635 16 + TSS region transcription start site region 113018
Tssr113019 12 26473403 to 26473415 12 + TSS region transcription start site region 113019
Tssr113020 12 26474032 to 26474067 35 + TSS region transcription start site region 113020
Tssr115954 12 26474078 to 26474096 18 - TSS region transcription start site region 115954
Tssr113021 12 26476208 to 26476219 11 + TSS region transcription start site region 113021
Tssr113022 12 26477051 to 26477064 13 + TSS region transcription start site region 113022
Tssr113023 12 26478011 to 26478021 10 + TSS region transcription start site region 113023
Tssr113024 12 26478097 to 26478111 14 + TSS region transcription start site region 113024
Tssr113025 12 26478116 to 26478130 14 + TSS region transcription start site region 113025
Tssr113026 12 26478141 to 26478159 18 + TSS region transcription start site region 113026
Tssr113027 12 26478161 to 26478189 28 + TSS region transcription start site region 113027
Tssr113028 12 26478218 to 26478231 13 + TSS region transcription start site region 113028
Tssr113029 12 26478254 to 26478277 23 + TSS region transcription start site region 113029
Tssr113030 12 26478339 to 26478367 28 + TSS region transcription start site region 113030
Tssr113031 12 26478390 to 26478402 12 + TSS region transcription start site region 113031
Tssr113032 12 26478470 to 26478481 11 + TSS region transcription start site region 113032
Tssr113033 12 26478853 to 26478872 19 + TSS region transcription start site region 113033
Tssr113034 12 26479034 to 26479045 11 + TSS region transcription start site region 113034
Tssr113035 12 26479108 to 26479121 13 + TSS region transcription start site region 113035
Tssr113036 12 26479177 to 26479191 14 + TSS region transcription start site region 113036
Tssr113037 12 26479198 to 26479214 16 + TSS region transcription start site region 113037
Tssr113038 12 26479221 to 26479234 13 + TSS region transcription start site region 113038
Tssr113039 12 26479239 to 26479260 21 + TSS region transcription start site region 113039
Tssr113040 12 26479308 to 26479319 11 + TSS region transcription start site region 113040
D12Mit268 12 26482565 to 26482686 121 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 268
Gm46344 12 26485905 to 26486791 886 - pseudogene predicted gene, 46344
1700020D12Rik 12 26572108 to 26602309 30201 - lincRNA gene RIKEN cDNA 1700020D12 gene
Gm47847 12 26597259 to 26645747 48488 + lincRNA gene predicted gene, 47847
4933409F18Rik 12 26814371 to 26834873 20502 - lincRNA gene RIKEN cDNA 4933409F18 gene
Tssr115955 12 26834790 to 26834801 11 - TSS region transcription start site region 115955
Tssr115956 12 26834871 to 26834882 11 - TSS region transcription start site region 115956
Gm30290 12 26877471 to 26887681 10210 + lncRNA gene predicted gene, 30290
D12Mit283 12 26906571 to 26906681 110 DNA segment DNA Segment, Chr 12, Massachusetts Institute of Technology 283
Gm30350 12 26967077 to 26967833 756 + lncRNA gene predicted gene, 30350
D12Ertd129e 12 26984502 to 26984714 212 DNA segment DNA segment, Chr 12, ERATO Doi 129, expressed
Gm30515 12 27029887 to 27083550 53663 - lncRNA gene predicted gene, 30515
D12Mit185 12 27065591 to 27065736 145 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 185
Gm30401 12 27083607 to 27133021 49414 + lncRNA gene predicted gene, 30401
Gm20187 12 27090237 to 27114995 24758 - lncRNA gene predicted gene, 20187
Gm9866 12 27140796 to 27160516 19720 - lincRNA gene predicted gene 9866
Tssr115957 12 27160447 to 27160476 29 - TSS region transcription start site region 115957
Tssr115958 12 27160477 to 27160492 15 - TSS region transcription start site region 115958
Tssr115959 12 27160498 to 27160522 24 - TSS region transcription start site region 115959
Gm40872 12 27169772 to 27208051 38279 - lncRNA gene predicted gene, 40872