Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:24703137-25933148

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96 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi4495 12 24706760 to 24707004 244 CpG island CpG island 4495
Tssr112961 12 24707811 to 24707824 13 + TSS region transcription start site region 112961
Cpgi4496 12 24707837 to 24709026 1189 CpG island CpG island 4496
Rrm2 12 24708254 to 24714146 5892 + protein coding gene ribonucleotide reductase M2
Tssr112962 12 24708274 to 24708292 18 + TSS region transcription start site region 112962
Tssr112963 12 24708552 to 24708565 13 + TSS region transcription start site region 112963
Tssr112964 12 24708725 to 24708771 46 + TSS region transcription start site region 112964
Tssr112965 12 24708984 to 24709004 20 + TSS region transcription start site region 112965
Tssr112966 12 24713692 to 24713699 7 + TSS region transcription start site region 112966
Tssr112967 12 24713729 to 24713735 6 + TSS region transcription start site region 112967
Gm46316 12 24759488 to 24759746 258 + pseudogene predicted gene, 46316
Gm48895 12 24760225 to 24760618 393 + pseudogene predicted gene, 48895
Gm48896 12 24762341 to 24764936 2595 + lincRNA gene predicted gene, 48896
Tssr115879 12 24767599 to 24767609 10 - TSS region transcription start site region 115879
Gm9318 12 24776246 to 24776683 437 - pseudogene predicted gene 9318
Gm26211 12 24779018 to 24779146 128 + snoRNA gene predicted gene, 26211
Gm48897 12 24779173 to 24779467 294 + pseudogene predicted gene, 48897
2900060N12Rik 12 24796664 to 24831202 34538 - bidirectional promoter lncRNA gene RIKEN cDNA 2900060N12 gene
Cpgi4497 12 24830724 to 24832379 1655 CpG island CpG island 4497
Tssr3811 12 24830892 to 24830914 22 + TSS region transcription start site region 3811
Tssr115880 12 24831123 to 24831136 13 - TSS region transcription start site region 115880
Tssr115881 12 24831300 to 24831323 23 - TSS region transcription start site region 115881
Mboat2 12 24831549 to 24964400 132851 + protein coding gene membrane bound O-acyltransferase domain containing 2
Tssr112968 12 24831569 to 24831578 9 + TSS region transcription start site region 112968
Tssr112969 12 24831583 to 24831658 75 + TSS region transcription start site region 112969
2900021C02Rik 12 24856976 to 24857868 892 unclassified gene RIKEN cDNA 2900021C02 gene
Tssr112970 12 24864150 to 24864154 4 + TSS region transcription start site region 112970
Tssr3812 12 24890915 to 24890919 4 + TSS region transcription start site region 3812
BC023202 12 24960656 to 24964396 3740 unclassified gene cDNA sequence BC023202
Tssr112971 12 24973806 to 24973813 7 + TSS region transcription start site region 112971
Tssr112972 12 24973891 to 24973902 11 + TSS region transcription start site region 112972
Gm36236 12 24974609 to 24975554 945 - bidirectional promoter lncRNA gene predicted gene, 36236
Cpgi4498 12 24974741 to 24975462 721 CpG island CpG island 4498
Tssr112973 12 24974914 to 24974948 34 + TSS region transcription start site region 112973
Kidins220 12 24974925 to 25063152 88227 + protein coding gene kinase D-interacting substrate 220
Tssr112974 12 24982269 to 24982286 17 + TSS region transcription start site region 112974
Tssr112975 12 24989757 to 24989769 12 + TSS region transcription start site region 112975
Tssr115882 12 25002878 to 25002882 4 - TSS region transcription start site region 115882
Tssr112976 12 25038355 to 25038380 25 + TSS region transcription start site region 112976
Tssr112977 12 25040095 to 25040102 7 + TSS region transcription start site region 112977
Tssr112978 12 25042662 to 25042666 4 + TSS region transcription start site region 112978
2900003A17Rik 12 25061783 to 25062313 530 unclassified gene RIKEN cDNA 2900003A17 gene
Gm47701 12 25064692 to 25067478 2786 + lincRNA gene predicted gene, 47701
Cpgi4499 12 25092227 to 25093034 807 CpG island CpG island 4499
Id2 12 25093799 to 25096092 2293 - protein coding gene inhibitor of DNA binding 2
Tssr115883 12 25094528 to 25094530 2 - TSS region transcription start site region 115883
Cpgi4500 12 25095487 to 25096761 1274 CpG island CpG island 4500
Tssr112979 12 25095717 to 25095739 22 + TSS region transcription start site region 112979
Tssr115884 12 25095721 to 25095793 72 - TSS region transcription start site region 115884
Tssr115885 12 25096080 to 25096096 16 - TSS region transcription start site region 115885
Tssr112980 12 25096437 to 25096449 12 + TSS region transcription start site region 112980
Tssr112981 12 25096452 to 25096487 35 + TSS region transcription start site region 112981
Tssr115886 12 25097239 to 25097283 44 - TSS region transcription start site region 115886
Tssr112982 12 25097428 to 25097439 11 + TSS region transcription start site region 112982
Cpgi4501 12 25098331 to 25099528 1197 CpG island CpG island 4501
Tssr112983 12 25098997 to 25099028 31 + TSS region transcription start site region 112983
Cpgi4502 12 25099582 to 25100066 484 CpG island CpG island 4502
Tssr112984 12 25099691 to 25099719 28 + TSS region transcription start site region 112984
Tssr112985 12 25099826 to 25099836 10 + TSS region transcription start site region 112985
Cpgi4503 12 25100591 to 25101300 709 CpG island CpG island 4503
Tssr115887 12 25101195 to 25101226 31 - TSS region transcription start site region 115887
Gm17746 12 25129174 to 25132274 3100 + lincRNA gene predicted gene, 17746
Gm36287 12 25150915 to 25209377 58462 + lincRNA gene predicted gene, 36287
Gm47705 12 25181768 to 25189630 7862 + lincRNA gene predicted gene, 47705
Gm36496 12 25187505 to 25191001 3496 - lncRNA gene predicted gene, 36496
Tssr115888 12 25189095 to 25189101 6 - TSS region transcription start site region 115888
Tssr115889 12 25189580 to 25189597 17 - TSS region transcription start site region 115889
Tssr115890 12 25189602 to 25189614 12 - TSS region transcription start site region 115890
Tssr115891 12 25189661 to 25189673 12 - TSS region transcription start site region 115891
Gm36441 12 25207602 to 25214605 7003 - lncRNA gene predicted gene, 36441
Tssr115892 12 25241989 to 25242024 35 - TSS region transcription start site region 115892
Tssr112986 12 25254763 to 25254804 41 + TSS region transcription start site region 112986
Tssr112987 12 25254951 to 25254963 12 + TSS region transcription start site region 112987
Tssr115893 12 25272832 to 25272852 20 - TSS region transcription start site region 115893
Gm19340 12 25282595 to 25282939 344 + pseudogene predicted gene, 19340
Tssr112988 12 25285098 to 25285105 7 + TSS region transcription start site region 112988
Gm47713 12 25300071 to 25304613 4542 - lincRNA gene predicted gene, 47713
Cd4ts5 12 25302445 to 25302582 137 QTL CD4 T cell subset 5
D12Mit105 12 25302445 to 25302582 137 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 105
Gm46343 12 25303617 to 25311245 7628 + lncRNA gene predicted gene, 46343
Tssr112989 12 25303753 to 25303758 5 + TSS region transcription start site region 112989
Tssr112990 12 25316186 to 25316198 12 + TSS region transcription start site region 112990
Tssr112991 12 25318137 to 25318148 11 + TSS region transcription start site region 112991
Tssr112992 12 25318150 to 25318163 13 + TSS region transcription start site region 112992
Tssr115894 12 25319984 to 25319992 8 - TSS region transcription start site region 115894
Tssr112993 12 25320802 to 25320811 9 + TSS region transcription start site region 112993
Tssr112994 12 25320812 to 25320824 12 + TSS region transcription start site region 112994
Tssr112995 12 25335325 to 25335338 13 + TSS region transcription start site region 112995
Gm36723 12 25355902 to 25471867 115965 + lincRNA gene predicted gene, 36723
Tssr112996 12 25381959 to 25381972 13 + TSS region transcription start site region 112996
Tssr3813 12 25382014 to 25382023 9 + TSS region transcription start site region 3813
Tssr115895 12 25396859 to 25396860 1 - TSS region transcription start site region 115895
Gm36886 12 25474675 to 25480258 5583 + lncRNA gene predicted gene, 36886
Gm22527 12 25687801 to 25687906 105 + rRNA gene predicted gene, 22527
Gm9321 12 25819764 to 25820541 777 - pseudogene predicted gene 9321
Gm47733 12 25871153 to 25871561 408 + lincRNA gene predicted gene, 47733