Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:24642172-28252196

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317 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi4493 12 24650764 to 24652332 1568 CpG island CpG island 4493
Tssr115874 12 24651055 to 24651097 42 - TSS region transcription start site region 115874
Tssr112956 12 24651346 to 24651409 63 + TSS region transcription start site region 112956
Klf11 12 24651371 to 24662782 11411 + protein coding gene Kruppel-like factor 11
Tssr112957 12 24651421 to 24651432 11 + TSS region transcription start site region 112957
Cys1 12 24665833 to 24681813 15980 - protein coding gene cystin 1
D12Mit12 12 24673159 to 24673302 143 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 12
Eae16 12 24673159 to 24673302 143 QTL experimental allergic encephalomyelitis susceptibility 16
Gm36129 12 24679276 to 24700973 21697 + lncRNA gene predicted gene, 36129
Tssr112958 12 24679780 to 24679790 10 + TSS region transcription start site region 112958
Cpgi4494 12 24680509 to 24681342 833 CpG island CpG island 4494
Tssr115875 12 24680890 to 24680943 53 - TSS region transcription start site region 115875
Tssr115876 12 24681776 to 24681812 36 - TSS region transcription start site region 115876
Tssr115877 12 24681826 to 24681844 18 - TSS region transcription start site region 115877
Tssr115878 12 24681853 to 24681854 1 - TSS region transcription start site region 115878
Tssr112959 12 24681925 to 24681936 11 + TSS region transcription start site region 112959
Tssr112960 12 24682696 to 24682700 4 + TSS region transcription start site region 112960
Cpgi4495 12 24706760 to 24707004 244 CpG island CpG island 4495
Tssr112961 12 24707811 to 24707824 13 + TSS region transcription start site region 112961
Cpgi4496 12 24707837 to 24709026 1189 CpG island CpG island 4496
Rrm2 12 24708254 to 24714146 5892 + protein coding gene ribonucleotide reductase M2
Tssr112962 12 24708274 to 24708292 18 + TSS region transcription start site region 112962
Tssr112963 12 24708552 to 24708565 13 + TSS region transcription start site region 112963
Tssr112964 12 24708725 to 24708771 46 + TSS region transcription start site region 112964
Tssr112965 12 24708984 to 24709004 20 + TSS region transcription start site region 112965
Tssr112966 12 24713692 to 24713699 7 + TSS region transcription start site region 112966
Tssr112967 12 24713729 to 24713735 6 + TSS region transcription start site region 112967
Gm46316 12 24759488 to 24759746 258 + pseudogene predicted gene, 46316
Gm48895 12 24760225 to 24760618 393 + pseudogene predicted gene, 48895
Gm48896 12 24762341 to 24764936 2595 + lincRNA gene predicted gene, 48896
Tssr115879 12 24767599 to 24767609 10 - TSS region transcription start site region 115879
Gm9318 12 24776246 to 24776683 437 - pseudogene predicted gene 9318
Gm26211 12 24779018 to 24779146 128 + snoRNA gene predicted gene, 26211
Gm48897 12 24779173 to 24779467 294 + pseudogene predicted gene, 48897
2900060N12Rik 12 24796664 to 24831202 34538 - bidirectional promoter lncRNA gene RIKEN cDNA 2900060N12 gene
Cpgi4497 12 24830724 to 24832379 1655 CpG island CpG island 4497
Tssr3811 12 24830892 to 24830914 22 + TSS region transcription start site region 3811
Tssr115880 12 24831123 to 24831136 13 - TSS region transcription start site region 115880
Tssr115881 12 24831300 to 24831323 23 - TSS region transcription start site region 115881
Mboat2 12 24831549 to 24964400 132851 + protein coding gene membrane bound O-acyltransferase domain containing 2
Tssr112968 12 24831569 to 24831578 9 + TSS region transcription start site region 112968
Tssr112969 12 24831583 to 24831658 75 + TSS region transcription start site region 112969
2900021C02Rik 12 24856976 to 24857868 892 unclassified gene RIKEN cDNA 2900021C02 gene
Tssr112970 12 24864150 to 24864154 4 + TSS region transcription start site region 112970
Tssr3812 12 24890915 to 24890919 4 + TSS region transcription start site region 3812
BC023202 12 24960656 to 24964396 3740 unclassified gene cDNA sequence BC023202
Tssr112971 12 24973806 to 24973813 7 + TSS region transcription start site region 112971
Tssr112972 12 24973891 to 24973902 11 + TSS region transcription start site region 112972
Gm36236 12 24974609 to 24975554 945 - bidirectional promoter lncRNA gene predicted gene, 36236
Cpgi4498 12 24974741 to 24975462 721 CpG island CpG island 4498
Tssr112973 12 24974914 to 24974948 34 + TSS region transcription start site region 112973
Kidins220 12 24974925 to 25063152 88227 + protein coding gene kinase D-interacting substrate 220
Tssr112974 12 24982269 to 24982286 17 + TSS region transcription start site region 112974
Tssr112975 12 24989757 to 24989769 12 + TSS region transcription start site region 112975
Tssr115882 12 25002878 to 25002882 4 - TSS region transcription start site region 115882
Tssr112976 12 25038355 to 25038380 25 + TSS region transcription start site region 112976
Tssr112977 12 25040095 to 25040102 7 + TSS region transcription start site region 112977
Tssr112978 12 25042662 to 25042666 4 + TSS region transcription start site region 112978
2900003A17Rik 12 25061783 to 25062313 530 unclassified gene RIKEN cDNA 2900003A17 gene
Gm47701 12 25064692 to 25067478 2786 + lincRNA gene predicted gene, 47701
Cpgi4499 12 25092227 to 25093034 807 CpG island CpG island 4499
Id2 12 25093799 to 25096092 2293 - protein coding gene inhibitor of DNA binding 2
Tssr115883 12 25094528 to 25094530 2 - TSS region transcription start site region 115883
Cpgi4500 12 25095487 to 25096761 1274 CpG island CpG island 4500
Tssr112979 12 25095717 to 25095739 22 + TSS region transcription start site region 112979
Tssr115884 12 25095721 to 25095793 72 - TSS region transcription start site region 115884
Tssr115885 12 25096080 to 25096096 16 - TSS region transcription start site region 115885
Tssr112980 12 25096437 to 25096449 12 + TSS region transcription start site region 112980
Tssr112981 12 25096452 to 25096487 35 + TSS region transcription start site region 112981
Tssr115886 12 25097239 to 25097283 44 - TSS region transcription start site region 115886
Tssr112982 12 25097428 to 25097439 11 + TSS region transcription start site region 112982
Cpgi4501 12 25098331 to 25099528 1197 CpG island CpG island 4501
Tssr112983 12 25098997 to 25099028 31 + TSS region transcription start site region 112983
Cpgi4502 12 25099582 to 25100066 484 CpG island CpG island 4502
Tssr112984 12 25099691 to 25099719 28 + TSS region transcription start site region 112984
Tssr112985 12 25099826 to 25099836 10 + TSS region transcription start site region 112985
Cpgi4503 12 25100591 to 25101300 709 CpG island CpG island 4503
Tssr115887 12 25101195 to 25101226 31 - TSS region transcription start site region 115887
Gm17746 12 25129174 to 25132274 3100 + lincRNA gene predicted gene, 17746
Gm36287 12 25150915 to 25209377 58462 + lincRNA gene predicted gene, 36287
Gm47705 12 25181768 to 25189630 7862 + lincRNA gene predicted gene, 47705
Gm36496 12 25187505 to 25191001 3496 - lncRNA gene predicted gene, 36496
Tssr115888 12 25189095 to 25189101 6 - TSS region transcription start site region 115888
Tssr115889 12 25189580 to 25189597 17 - TSS region transcription start site region 115889
Tssr115890 12 25189602 to 25189614 12 - TSS region transcription start site region 115890
Tssr115891 12 25189661 to 25189673 12 - TSS region transcription start site region 115891
Gm36441 12 25207602 to 25214605 7003 - lncRNA gene predicted gene, 36441
Tssr115892 12 25241989 to 25242024 35 - TSS region transcription start site region 115892
Tssr112986 12 25254763 to 25254804 41 + TSS region transcription start site region 112986
Tssr112987 12 25254951 to 25254963 12 + TSS region transcription start site region 112987
Tssr115893 12 25272832 to 25272852 20 - TSS region transcription start site region 115893
Gm19340 12 25282595 to 25282939 344 + pseudogene predicted gene, 19340
Tssr112988 12 25285098 to 25285105 7 + TSS region transcription start site region 112988
Gm47713 12 25300071 to 25304613 4542 - lincRNA gene predicted gene, 47713
D12Mit105 12 25302445 to 25302582 137 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 105
Cd4ts5 12 25302445 to 25302582 137 QTL CD4 T cell subset 5
Gm46343 12 25303617 to 25311245 7628 + lncRNA gene predicted gene, 46343
Tssr112989 12 25303753 to 25303758 5 + TSS region transcription start site region 112989
Tssr112990 12 25316186 to 25316198 12 + TSS region transcription start site region 112990
Tssr112991 12 25318137 to 25318148 11 + TSS region transcription start site region 112991
Tssr112992 12 25318150 to 25318163 13 + TSS region transcription start site region 112992
Tssr115894 12 25319984 to 25319992 8 - TSS region transcription start site region 115894
Tssr112993 12 25320802 to 25320811 9 + TSS region transcription start site region 112993
Tssr112994 12 25320812 to 25320824 12 + TSS region transcription start site region 112994
Tssr112995 12 25335325 to 25335338 13 + TSS region transcription start site region 112995
Gm36723 12 25355902 to 25471867 115965 + lincRNA gene predicted gene, 36723
Tssr112996 12 25381959 to 25381972 13 + TSS region transcription start site region 112996
Tssr3813 12 25382014 to 25382023 9 + TSS region transcription start site region 3813
Tssr115895 12 25396859 to 25396860 1 - TSS region transcription start site region 115895
Gm36886 12 25474675 to 25480258 5583 + lncRNA gene predicted gene, 36886
Gm22527 12 25687801 to 25687906 105 + rRNA gene predicted gene, 22527
Gm9321 12 25819764 to 25820541 777 - pseudogene predicted gene 9321
Gm47733 12 25871153 to 25871561 408 + lincRNA gene predicted gene, 47733
Gm29835 12 25979043 to 25991775 12732 + lncRNA gene predicted gene, 29835
Gm29687 12 26091962 to 26210505 118543 - lincRNA gene predicted gene, 29687
Gm47750 12 26150316 to 26150513 197 + pseudogene predicted gene, 47750
Tssr115896 12 26187553 to 26187582 29 - TSS region transcription start site region 115896
Tssr3814 12 26187733 to 26187740 7 + TSS region transcription start site region 3814
4930480M12Rik 12 26211267 to 26240707 29440 + lincRNA gene RIKEN cDNA 4930480M12 gene
D12Mit83 12 26235177 to 26235321 144 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 83
Gm29968 12 26235530 to 26252545 17015 - lincRNA gene predicted gene, 29968
Rnf144a 12 26306794 to 26415320 108526 - protein coding gene ring finger protein 144A
Tssr115897 12 26346589 to 26346608 19 - TSS region transcription start site region 115897
4930549C15Rik 12 26346717 to 26371748 25031 + antisense lncRNA gene RIKEN cDNA 4930549C15 gene
Tssr112997 12 26346731 to 26346743 12 + TSS region transcription start site region 112997
Tssr115898 12 26413998 to 26414013 15 - TSS region transcription start site region 115898
Cpgi4504 12 26414421 to 26415663 1242 CpG island CpG island 4504
Mir6538 12 26414901 to 26415010 109 - miRNA gene microRNA 6538
Tssr115899 12 26415199 to 26415214 15 - TSS region transcription start site region 115899
Tssr115900 12 26415228 to 26415242 14 - TSS region transcription start site region 115900
Tssr115901 12 26415257 to 26415303 46 - TSS region transcription start site region 115901
Gm47799 12 26431153 to 26436819 5666 - pseudogene predicted gene, 47799
Fcsa7 12 26441005 to 26441113 108 QTL femoral cross-sectional area 7
D12Mit219 12 26441005 to 26441113 108 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 219
Rsad2 12 26442746 to 26456452 13706 - protein coding gene radical S-adenosyl methionine domain containing 2
Tssr115902 12 26442857 to 26442870 13 - TSS region transcription start site region 115902
Tssr115903 12 26443189 to 26443200 11 - TSS region transcription start site region 115903
Tssr115904 12 26443206 to 26443224 18 - TSS region transcription start site region 115904
Tssr115905 12 26443511 to 26443522 11 - TSS region transcription start site region 115905
Tssr115906 12 26443639 to 26443642 3 - TSS region transcription start site region 115906
Tssr115907 12 26443694 to 26443701 7 - TSS region transcription start site region 115907
Tssr115908 12 26443734 to 26443745 11 - TSS region transcription start site region 115908
Tssr112998 12 26443741 to 26443753 12 + TSS region transcription start site region 112998
Tssr112999 12 26443788 to 26443818 30 + TSS region transcription start site region 112999
Tssr115909 12 26443820 to 26443829 9 - TSS region transcription start site region 115909
Tssr115910 12 26443872 to 26443883 11 - TSS region transcription start site region 115910
Tssr113000 12 26443912 to 26443919 7 + TSS region transcription start site region 113000
Tssr115911 12 26443922 to 26443931 9 - TSS region transcription start site region 115911
Tssr115912 12 26443936 to 26443945 9 - TSS region transcription start site region 115912
Tssr115913 12 26443971 to 26443980 9 - TSS region transcription start site region 115913
Tssr115914 12 26444023 to 26444028 5 - TSS region transcription start site region 115914
Tssr115915 12 26444052 to 26444071 19 - TSS region transcription start site region 115915
Tssr115916 12 26444109 to 26444112 3 - TSS region transcription start site region 115916
Tssr115917 12 26444155 to 26444162 7 - TSS region transcription start site region 115917
Tssr115918 12 26444174 to 26444177 3 - TSS region transcription start site region 115918
Tssr115919 12 26444201 to 26444208 7 - TSS region transcription start site region 115919
Tssr115920 12 26444228 to 26444240 12 - TSS region transcription start site region 115920
Tssr113001 12 26444386 to 26444406 20 + TSS region transcription start site region 113001
Tssr113002 12 26444410 to 26444430 20 + TSS region transcription start site region 113002
Tssr113003 12 26444485 to 26444518 33 + TSS region transcription start site region 113003
Tssr115921 12 26444533 to 26444616 83 - TSS region transcription start site region 115921
Tssr113004 12 26444545 to 26444569 24 + TSS region transcription start site region 113004
Tssr113005 12 26444571 to 26444578 7 + TSS region transcription start site region 113005
Tssr115922 12 26444629 to 26444641 12 - TSS region transcription start site region 115922
Tssr115923 12 26444712 to 26444734 22 - TSS region transcription start site region 115923
Tssr115924 12 26444783 to 26444794 11 - TSS region transcription start site region 115924
Tssr115925 12 26444798 to 26444809 11 - TSS region transcription start site region 115925
Tssr113006 12 26444934 to 26444945 11 + TSS region transcription start site region 113006
Tssr113007 12 26445018 to 26445035 17 + TSS region transcription start site region 113007
Tssr115926 12 26445147 to 26445160 13 - TSS region transcription start site region 115926
Tssr113008 12 26445186 to 26445203 17 + TSS region transcription start site region 113008
Tssr115927 12 26445191 to 26445201 10 - TSS region transcription start site region 115927
Tssr113009 12 26445204 to 26445218 14 + TSS region transcription start site region 113009
Tssr113010 12 26445354 to 26445408 54 + TSS region transcription start site region 113010
Tssr115928 12 26447172 to 26447196 24 - TSS region transcription start site region 115928
Tssr115929 12 26447202 to 26447210 8 - TSS region transcription start site region 115929
Tssr115930 12 26447478 to 26447495 17 - TSS region transcription start site region 115930
Tssr115931 12 26447516 to 26447527 11 - TSS region transcription start site region 115931
Tssr115932 12 26447923 to 26447943 20 - TSS region transcription start site region 115932
Tssr115933 12 26447947 to 26447958 11 - TSS region transcription start site region 115933
Tssr115934 12 26448154 to 26448175 21 - TSS region transcription start site region 115934
Tssr115935 12 26448200 to 26448225 25 - TSS region transcription start site region 115935
Tssr115936 12 26448375 to 26448389 14 - TSS region transcription start site region 115936
Tssr115937 12 26448573 to 26448586 13 - TSS region transcription start site region 115937
Tssr115938 12 26448611 to 26448644 33 - TSS region transcription start site region 115938
Tssr113011 12 26448658 to 26448677 19 + TSS region transcription start site region 113011
Tssr115939 12 26448667 to 26448681 14 - TSS region transcription start site region 115939
Tssr115940 12 26448682 to 26448713 31 - TSS region transcription start site region 115940
Tssr115941 12 26448716 to 26448742 26 - TSS region transcription start site region 115941
Tssr115942 12 26450537 to 26450549 12 - TSS region transcription start site region 115942
Tssr115943 12 26450579 to 26450658 79 - TSS region transcription start site region 115943
Tssr115944 12 26450675 to 26450684 9 - TSS region transcription start site region 115944
Tssr115945 12 26450715 to 26450778 63 - TSS region transcription start site region 115945
Tssr115946 12 26453722 to 26453733 11 - TSS region transcription start site region 115946
Tssr115947 12 26454048 to 26454160 112 - TSS region transcription start site region 115947
Tssr115948 12 26455206 to 26455224 18 - TSS region transcription start site region 115948
Tssr115949 12 26455602 to 26455623 21 - TSS region transcription start site region 115949
Tssr115950 12 26455726 to 26455737 11 - TSS region transcription start site region 115950
Tssr113012 12 26456116 to 26456127 11 + TSS region transcription start site region 113012
Tssr115951 12 26456423 to 26456440 17 - TSS region transcription start site region 115951