Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:23881421-25421432

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152 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm40870 12 23879553 to 23886414 6861 - lncRNA gene predicted gene, 40870
Gm46342 12 23896367 to 23899300 2933 + lincRNA gene predicted gene, 46342
Tssr112943 12 23903123 to 23903136 13 + TSS region transcription start site region 112943
Tssr112944 12 23903145 to 23903187 42 + TSS region transcription start site region 112944
Gm47441 12 23903253 to 23903369 116 + pseudogene predicted gene, 47441
Gm47442 12 23937396 to 23937503 107 + pseudogene predicted gene, 47442
Gm47443 12 23941284 to 23941384 100 - pseudogene predicted gene, 47443
Gm17330 12 23968681 to 23968845 164 - protein coding gene predicted gene, 17330
Gm47444 12 23977124 to 23977228 104 - pseudogene predicted gene, 47444
Gm5954 12 24013354 to 24016997 3643 - protein coding gene predicted gene 5954
9030624G23Rik 12 24043202 to 24097246 54044 - protein coding gene RIKEN cDNA 9030624G23 gene
Cpgi4487 12 24097016 to 24097569 553 CpG island CpG island 4487
Gm47446 12 24176380 to 24179269 2889 - pseudogene predicted gene, 47446
Gm21297 12 24252056 to 24252181 125 - protein coding gene predicted gene, 21297
Cpgi4488 12 24252079 to 24252701 622 CpG island CpG island 4488
Gm4120 12 24302807 to 24308251 5444 - pseudogene predicted gene 4120
D12Mit282b 12 24302960 to 24303082 122 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 282b
Gm47478 12 24367361 to 24367480 119 - pseudogene predicted gene, 47478
Gm9315 12 24382254 to 24383161 907 - pseudogene predicted gene 9315
4930431C11Rik 12 24424838 to 24428122 3284 unclassified gene RIKEN cDNA 4930431C11 gene
Gm16372 12 24493207 to 24493656 449 - pseudogene predicted pseudogene 16372
Cpgi4489 12 24493221 to 24493796 575 CpG island CpG island 4489
Tssr115871 12 24493451 to 24493482 31 - TSS region transcription start site region 115871
Tssr115872 12 24493696 to 24493738 42 - TSS region transcription start site region 115872
Cpgi4490 12 24498490 to 24498912 422 CpG island CpG island 4490
Tssr112945 12 24498570 to 24498587 17 + TSS region transcription start site region 112945
Taf1b 12 24498581 to 24558571 59990 + protein coding gene TATA-box binding protein associated factor, RNA polymerase I, B
Tssr112946 12 24498591 to 24498617 26 + TSS region transcription start site region 112946
Gm47482 12 24512674 to 24512839 165 - pseudogene predicted gene, 47482
Cpgi4491 12 24571713 to 24572783 1070 CpG island CpG island 4491
Tssr112947 12 24572249 to 24572266 17 + TSS region transcription start site region 112947
Tssr112948 12 24572276 to 24572308 32 + TSS region transcription start site region 112948
Grhl1 12 24572283 to 24617391 45108 + protein coding gene grainyhead like transcription factor 1
Tssr112949 12 24572311 to 24572325 14 + TSS region transcription start site region 112949
Tssr112950 12 24572400 to 24572429 29 + TSS region transcription start site region 112950
Tssr112951 12 24572433 to 24572458 25 + TSS region transcription start site region 112951
Tssr112952 12 24572578 to 24572589 11 + TSS region transcription start site region 112952
Tssr112953 12 24572621 to 24572633 12 + TSS region transcription start site region 112953
Tssr112954 12 24575826 to 24575829 3 + TSS region transcription start site region 112954
Tssr112955 12 24581499 to 24581529 30 + TSS region transcription start site region 112955
Cpgi4492 12 24593154 to 24593408 254 CpG island CpG island 4492
Gm6969 12 24638669 to 24639010 341 - pseudogene predicted pseudogene 6969
Tssr115873 12 24639033 to 24639072 39 - TSS region transcription start site region 115873
Cpgi4493 12 24650764 to 24652332 1568 CpG island CpG island 4493
Tssr115874 12 24651055 to 24651097 42 - TSS region transcription start site region 115874
Tssr112956 12 24651346 to 24651409 63 + TSS region transcription start site region 112956
Klf11 12 24651371 to 24662782 11411 + protein coding gene Kruppel-like factor 11
Tssr112957 12 24651421 to 24651432 11 + TSS region transcription start site region 112957
Cys1 12 24665833 to 24681813 15980 - protein coding gene cystin 1
D12Mit12 12 24673159 to 24673302 143 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 12
Eae16 12 24673159 to 24673302 143 QTL experimental allergic encephalomyelitis susceptibility 16
Gm36129 12 24679276 to 24700973 21697 + lncRNA gene predicted gene, 36129
Tssr112958 12 24679780 to 24679790 10 + TSS region transcription start site region 112958
Cpgi4494 12 24680509 to 24681342 833 CpG island CpG island 4494
Tssr115875 12 24680890 to 24680943 53 - TSS region transcription start site region 115875
Tssr115876 12 24681776 to 24681812 36 - TSS region transcription start site region 115876
Tssr115877 12 24681826 to 24681844 18 - TSS region transcription start site region 115877
Tssr115878 12 24681853 to 24681854 1 - TSS region transcription start site region 115878
Tssr112959 12 24681925 to 24681936 11 + TSS region transcription start site region 112959
Tssr112960 12 24682696 to 24682700 4 + TSS region transcription start site region 112960
Cpgi4495 12 24706760 to 24707004 244 CpG island CpG island 4495
Tssr112961 12 24707811 to 24707824 13 + TSS region transcription start site region 112961
Cpgi4496 12 24707837 to 24709026 1189 CpG island CpG island 4496
Rrm2 12 24708254 to 24714146 5892 + protein coding gene ribonucleotide reductase M2
Tssr112962 12 24708274 to 24708292 18 + TSS region transcription start site region 112962
Tssr112963 12 24708552 to 24708565 13 + TSS region transcription start site region 112963
Tssr112964 12 24708725 to 24708771 46 + TSS region transcription start site region 112964
Tssr112965 12 24708984 to 24709004 20 + TSS region transcription start site region 112965
Tssr112966 12 24713692 to 24713699 7 + TSS region transcription start site region 112966
Tssr112967 12 24713729 to 24713735 6 + TSS region transcription start site region 112967
Gm46316 12 24759488 to 24759746 258 + pseudogene predicted gene, 46316
Gm48895 12 24760225 to 24760618 393 + pseudogene predicted gene, 48895
Gm48896 12 24762341 to 24764936 2595 + lincRNA gene predicted gene, 48896
Tssr115879 12 24767599 to 24767609 10 - TSS region transcription start site region 115879
Gm9318 12 24776246 to 24776683 437 - pseudogene predicted gene 9318
Gm26211 12 24779018 to 24779146 128 + snoRNA gene predicted gene, 26211
Gm48897 12 24779173 to 24779467 294 + pseudogene predicted gene, 48897
2900060N12Rik 12 24796664 to 24831202 34538 - bidirectional promoter lncRNA gene RIKEN cDNA 2900060N12 gene
Cpgi4497 12 24830724 to 24832379 1655 CpG island CpG island 4497
Tssr3811 12 24830892 to 24830914 22 + TSS region transcription start site region 3811
Tssr115880 12 24831123 to 24831136 13 - TSS region transcription start site region 115880
Tssr115881 12 24831300 to 24831323 23 - TSS region transcription start site region 115881
Mboat2 12 24831549 to 24964400 132851 + protein coding gene membrane bound O-acyltransferase domain containing 2
Tssr112968 12 24831569 to 24831578 9 + TSS region transcription start site region 112968
Tssr112969 12 24831583 to 24831658 75 + TSS region transcription start site region 112969
2900021C02Rik 12 24856976 to 24857868 892 unclassified gene RIKEN cDNA 2900021C02 gene
Tssr112970 12 24864150 to 24864154 4 + TSS region transcription start site region 112970
Tssr3812 12 24890915 to 24890919 4 + TSS region transcription start site region 3812
BC023202 12 24960656 to 24964396 3740 unclassified gene cDNA sequence BC023202
Tssr112971 12 24973806 to 24973813 7 + TSS region transcription start site region 112971
Tssr112972 12 24973891 to 24973902 11 + TSS region transcription start site region 112972
Gm36236 12 24974609 to 24975554 945 - bidirectional promoter lncRNA gene predicted gene, 36236
Cpgi4498 12 24974741 to 24975462 721 CpG island CpG island 4498
Tssr112973 12 24974914 to 24974948 34 + TSS region transcription start site region 112973
Kidins220 12 24974925 to 25063152 88227 + protein coding gene kinase D-interacting substrate 220
Tssr112974 12 24982269 to 24982286 17 + TSS region transcription start site region 112974
Tssr112975 12 24989757 to 24989769 12 + TSS region transcription start site region 112975
Tssr115882 12 25002878 to 25002882 4 - TSS region transcription start site region 115882
Tssr112976 12 25038355 to 25038380 25 + TSS region transcription start site region 112976
Tssr112977 12 25040095 to 25040102 7 + TSS region transcription start site region 112977
Tssr112978 12 25042662 to 25042666 4 + TSS region transcription start site region 112978
2900003A17Rik 12 25061783 to 25062313 530 unclassified gene RIKEN cDNA 2900003A17 gene
Gm47701 12 25064692 to 25067478 2786 + lincRNA gene predicted gene, 47701
Cpgi4499 12 25092227 to 25093034 807 CpG island CpG island 4499
Id2 12 25093799 to 25096092 2293 - protein coding gene inhibitor of DNA binding 2
Tssr115883 12 25094528 to 25094530 2 - TSS region transcription start site region 115883
Cpgi4500 12 25095487 to 25096761 1274 CpG island CpG island 4500
Tssr112979 12 25095717 to 25095739 22 + TSS region transcription start site region 112979
Tssr115884 12 25095721 to 25095793 72 - TSS region transcription start site region 115884
Tssr115885 12 25096080 to 25096096 16 - TSS region transcription start site region 115885
Tssr112980 12 25096437 to 25096449 12 + TSS region transcription start site region 112980
Tssr112981 12 25096452 to 25096487 35 + TSS region transcription start site region 112981
Tssr115886 12 25097239 to 25097283 44 - TSS region transcription start site region 115886
Tssr112982 12 25097428 to 25097439 11 + TSS region transcription start site region 112982
Cpgi4501 12 25098331 to 25099528 1197 CpG island CpG island 4501
Tssr112983 12 25098997 to 25099028 31 + TSS region transcription start site region 112983
Cpgi4502 12 25099582 to 25100066 484 CpG island CpG island 4502
Tssr112984 12 25099691 to 25099719 28 + TSS region transcription start site region 112984
Tssr112985 12 25099826 to 25099836 10 + TSS region transcription start site region 112985
Cpgi4503 12 25100591 to 25101300 709 CpG island CpG island 4503
Tssr115887 12 25101195 to 25101226 31 - TSS region transcription start site region 115887
Gm17746 12 25129174 to 25132274 3100 + lincRNA gene predicted gene, 17746
Gm36287 12 25150915 to 25209377 58462 + lincRNA gene predicted gene, 36287
Gm47705 12 25181768 to 25189630 7862 + lincRNA gene predicted gene, 47705
Gm36496 12 25187505 to 25191001 3496 - lncRNA gene predicted gene, 36496
Tssr115888 12 25189095 to 25189101 6 - TSS region transcription start site region 115888
Tssr115889 12 25189580 to 25189597 17 - TSS region transcription start site region 115889
Tssr115890 12 25189602 to 25189614 12 - TSS region transcription start site region 115890
Tssr115891 12 25189661 to 25189673 12 - TSS region transcription start site region 115891
Gm36441 12 25207602 to 25214605 7003 - lncRNA gene predicted gene, 36441
Tssr115892 12 25241989 to 25242024 35 - TSS region transcription start site region 115892
Tssr112986 12 25254763 to 25254804 41 + TSS region transcription start site region 112986
Tssr112987 12 25254951 to 25254963 12 + TSS region transcription start site region 112987
Tssr115893 12 25272832 to 25272852 20 - TSS region transcription start site region 115893
Gm19340 12 25282595 to 25282939 344 + pseudogene predicted gene, 19340
Tssr112988 12 25285098 to 25285105 7 + TSS region transcription start site region 112988
Gm47713 12 25300071 to 25304613 4542 - lincRNA gene predicted gene, 47713
D12Mit105 12 25302445 to 25302582 137 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 105
Cd4ts5 12 25302445 to 25302582 137 QTL CD4 T cell subset 5
Gm46343 12 25303617 to 25311245 7628 + lncRNA gene predicted gene, 46343
Tssr112989 12 25303753 to 25303758 5 + TSS region transcription start site region 112989
Tssr112990 12 25316186 to 25316198 12 + TSS region transcription start site region 112990
Tssr112991 12 25318137 to 25318148 11 + TSS region transcription start site region 112991
Tssr112992 12 25318150 to 25318163 13 + TSS region transcription start site region 112992
Tssr115894 12 25319984 to 25319992 8 - TSS region transcription start site region 115894
Tssr112993 12 25320802 to 25320811 9 + TSS region transcription start site region 112993
Tssr112994 12 25320812 to 25320824 12 + TSS region transcription start site region 112994
Tssr112995 12 25335325 to 25335338 13 + TSS region transcription start site region 112995
Gm36723 12 25355902 to 25471867 115965 + lincRNA gene predicted gene, 36723
Tssr112996 12 25381959 to 25381972 13 + TSS region transcription start site region 112996
Tssr3813 12 25382014 to 25382023 9 + TSS region transcription start site region 3813
Tssr115895 12 25396859 to 25396860 1 - TSS region transcription start site region 115895