Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:23152396-24722503

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97 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm47383 12 23155957 to 23156064 107 + pseudogene predicted gene, 47383
Tssr112942 12 23163421 to 23163433 12 + TSS region transcription start site region 112942
Gm47384 12 23166335 to 23166454 119 - pseudogene predicted gene, 47384
Cpgi4484 12 23189167 to 23189941 774 CpG island CpG island 4484
Gm47385 12 23189273 to 23189398 125 - pseudogene predicted gene, 47385
Gm47386 12 23197376 to 23197495 119 - pseudogene predicted gene, 47386
Gm26140 12 23199780 to 23199889 109 + miRNA gene predicted gene, 26140
Gm9291 12 23249274 to 23255551 6277 - pseudogene predicted pseudogene 9291
D12Mit10b 12 23263851 to 23263965 114 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 10b
Gm20472 12 23276362 to 23315393 39031 - pseudogene predicted gene 20472
Gm20473 12 23338309 to 23338420 111 - pseudogene predicted gene 20473
Gm9285 12 23361795 to 23367424 5629 - pseudogene predicted gene 9285
Gm40862 12 23396445 to 23634845 238400 - protein coding gene predicted gene, 40862
Gm47393 12 23426757 to 23426883 126 - pseudogene predicted gene, 47393
Gm47420 12 23435217 to 23435328 111 - pseudogene predicted gene, 47420
Gm47421 12 23465695 to 23465964 269 + pseudogene predicted gene, 47421
Gm9286 12 23479394 to 23484992 5598 - pseudogene predicted gene 9286
Gm47422 12 23503175 to 23503294 119 - pseudogene predicted gene, 47422
Gm20474 12 23526491 to 23573981 47490 - pseudogene predicted gene 20474
Gm49386 12 23634350 to 23634475 125 - pseudogene predicted gene, 49386
Gm9305 12 23711590 to 23714509 2919 - pseudogene predicted gene 9305
Gm9309 12 23733516 to 23736408 2892 - pseudogene predicted gene 9309
Gm10330 12 23778912 to 23780265 1353 - protein coding gene predicted gene 10330
Gm38699 12 23780857 to 23784131 3274 - protein coding gene predicted gene, 38699
Gm47437 12 23800521 to 23800646 125 - pseudogene predicted gene, 47437
Gm47440 12 23812883 to 23812987 104 - pseudogene predicted gene, 47440
Gm46315 12 23835426 to 23838842 3416 + pseudogene predicted gene, 46315
Gm40870 12 23879553 to 23886414 6861 - lncRNA gene predicted gene, 40870
Gm46342 12 23896367 to 23899300 2933 + lincRNA gene predicted gene, 46342
Tssr112943 12 23903123 to 23903136 13 + TSS region transcription start site region 112943
Tssr112944 12 23903145 to 23903187 42 + TSS region transcription start site region 112944
Gm47441 12 23903253 to 23903369 116 + pseudogene predicted gene, 47441
Gm47442 12 23937396 to 23937503 107 + pseudogene predicted gene, 47442
Gm47443 12 23941284 to 23941384 100 - pseudogene predicted gene, 47443
Gm17330 12 23968681 to 23968845 164 - protein coding gene predicted gene, 17330
Gm47444 12 23977124 to 23977228 104 - pseudogene predicted gene, 47444
Gm5954 12 24013354 to 24016997 3643 - protein coding gene predicted gene 5954
9030624G23Rik 12 24043202 to 24097246 54044 - protein coding gene RIKEN cDNA 9030624G23 gene
Cpgi4487 12 24097016 to 24097569 553 CpG island CpG island 4487
Gm47446 12 24176380 to 24179269 2889 - pseudogene predicted gene, 47446
Gm21297 12 24252056 to 24252181 125 - protein coding gene predicted gene, 21297
Cpgi4488 12 24252079 to 24252701 622 CpG island CpG island 4488
Gm4120 12 24302807 to 24308251 5444 - pseudogene predicted gene 4120
D12Mit282b 12 24302960 to 24303082 122 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 282b
Gm47478 12 24367361 to 24367480 119 - pseudogene predicted gene, 47478
Gm9315 12 24382254 to 24383161 907 - pseudogene predicted gene 9315
4930431C11Rik 12 24424838 to 24428122 3284 unclassified gene RIKEN cDNA 4930431C11 gene
Gm16372 12 24493207 to 24493656 449 - pseudogene predicted pseudogene 16372
Cpgi4489 12 24493221 to 24493796 575 CpG island CpG island 4489
Tssr115871 12 24493451 to 24493482 31 - TSS region transcription start site region 115871
Tssr115872 12 24493696 to 24493738 42 - TSS region transcription start site region 115872
Cpgi4490 12 24498490 to 24498912 422 CpG island CpG island 4490
Tssr112945 12 24498570 to 24498587 17 + TSS region transcription start site region 112945
Taf1b 12 24498581 to 24558571 59990 + protein coding gene TATA-box binding protein associated factor, RNA polymerase I, B
Tssr112946 12 24498591 to 24498617 26 + TSS region transcription start site region 112946
Gm47482 12 24512674 to 24512839 165 - pseudogene predicted gene, 47482
Cpgi4491 12 24571713 to 24572783 1070 CpG island CpG island 4491
Tssr112947 12 24572249 to 24572266 17 + TSS region transcription start site region 112947
Tssr112948 12 24572276 to 24572308 32 + TSS region transcription start site region 112948
Grhl1 12 24572283 to 24617391 45108 + protein coding gene grainyhead like transcription factor 1
Tssr112949 12 24572311 to 24572325 14 + TSS region transcription start site region 112949
Tssr112950 12 24572400 to 24572429 29 + TSS region transcription start site region 112950
Tssr112951 12 24572433 to 24572458 25 + TSS region transcription start site region 112951
Tssr112952 12 24572578 to 24572589 11 + TSS region transcription start site region 112952
Tssr112953 12 24572621 to 24572633 12 + TSS region transcription start site region 112953
Tssr112954 12 24575826 to 24575829 3 + TSS region transcription start site region 112954
Tssr112955 12 24581499 to 24581529 30 + TSS region transcription start site region 112955
Cpgi4492 12 24593154 to 24593408 254 CpG island CpG island 4492
Gm6969 12 24638669 to 24639010 341 - pseudogene predicted pseudogene 6969
Tssr115873 12 24639033 to 24639072 39 - TSS region transcription start site region 115873
Cpgi4493 12 24650764 to 24652332 1568 CpG island CpG island 4493
Tssr115874 12 24651055 to 24651097 42 - TSS region transcription start site region 115874
Tssr112956 12 24651346 to 24651409 63 + TSS region transcription start site region 112956
Klf11 12 24651371 to 24662782 11411 + protein coding gene Kruppel-like factor 11
Tssr112957 12 24651421 to 24651432 11 + TSS region transcription start site region 112957
Cys1 12 24665833 to 24681813 15980 - protein coding gene cystin 1
D12Mit12 12 24673159 to 24673302 143 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 12
Eae16 12 24673159 to 24673302 143 QTL experimental allergic encephalomyelitis susceptibility 16
Gm36129 12 24679276 to 24700973 21697 + lncRNA gene predicted gene, 36129
Tssr112958 12 24679780 to 24679790 10 + TSS region transcription start site region 112958
Cpgi4494 12 24680509 to 24681342 833 CpG island CpG island 4494
Tssr115875 12 24680890 to 24680943 53 - TSS region transcription start site region 115875
Tssr115876 12 24681776 to 24681812 36 - TSS region transcription start site region 115876
Tssr115877 12 24681826 to 24681844 18 - TSS region transcription start site region 115877
Tssr115878 12 24681853 to 24681854 1 - TSS region transcription start site region 115878
Tssr112959 12 24681925 to 24681936 11 + TSS region transcription start site region 112959
Tssr112960 12 24682696 to 24682700 4 + TSS region transcription start site region 112960
Cpgi4495 12 24706760 to 24707004 244 CpG island CpG island 4495
Tssr112961 12 24707811 to 24707824 13 + TSS region transcription start site region 112961
Cpgi4496 12 24707837 to 24709026 1189 CpG island CpG island 4496
Rrm2 12 24708254 to 24714146 5892 + protein coding gene ribonucleotide reductase M2
Tssr112962 12 24708274 to 24708292 18 + TSS region transcription start site region 112962
Tssr112963 12 24708552 to 24708565 13 + TSS region transcription start site region 112963
Tssr112964 12 24708725 to 24708771 46 + TSS region transcription start site region 112964
Tssr112965 12 24708984 to 24709004 20 + TSS region transcription start site region 112965
Tssr112966 12 24713692 to 24713699 7 + TSS region transcription start site region 112966
Tssr112967 12 24713729 to 24713735 6 + TSS region transcription start site region 112967