Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:21200382-23446042

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136 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Asap2 12 21111713 to 21270171 158458 + protein coding gene ArfGAP with SH3 domain, ankyrin repeat and PH domain 2
Tssr112924 12 21213040 to 21213060 20 + TSS region transcription start site region 112924
Tssr112925 12 21214874 to 21214878 4 + TSS region transcription start site region 112925
Tssr112926 12 21224286 to 21224323 37 + TSS region transcription start site region 112926
Gm40855 12 21240463 to 21250086 9623 - lncRNA gene predicted gene, 40855
Gm20535 12 21252118 to 21255952 3834 - unclassified non-coding RNA gene predicted gene 20535
Itgb1bp1 12 21267246 to 21286279 19033 - protein coding gene integrin beta 1 binding protein 1
Cpgi4475 12 21285603 to 21286643 1040 CpG island CpG island 4475
Tssr115852 12 21286116 to 21286162 46 - TSS region transcription start site region 115852
Tssr115853 12 21286176 to 21286268 92 - TSS region transcription start site region 115853
Tssr115854 12 21286287 to 21286298 11 - TSS region transcription start site region 115854
Tssr112927 12 21286288 to 21286299 11 + TSS region transcription start site region 112927
Cpsf3 12 21286297 to 21315056 28759 + protein coding gene cleavage and polyadenylation specificity factor 3
Tssr115855 12 21286307 to 21286327 20 - TSS region transcription start site region 115855
Tssr112928 12 21286308 to 21286329 21 + TSS region transcription start site region 112928
Tssr112929 12 21286336 to 21286451 115 + TSS region transcription start site region 112929
Tssr3809 12 21287510 to 21287514 4 + TSS region transcription start site region 3809
Gm25821 12 21287927 to 21288059 132 + snoRNA gene predicted gene, 25821
Cpgi4476 12 21316106 to 21316781 675 CpG island CpG island 4476
Iah1 12 21316361 to 21323607 7246 + protein coding gene isoamyl acetate-hydrolyzing esterase 1 homolog
Tssr112930 12 21316385 to 21316400 15 + TSS region transcription start site region 112930
Tssr112931 12 21316408 to 21316435 27 + TSS region transcription start site region 112931
Adam17 12 21323509 to 21373632 50123 - protein coding gene a disintegrin and metallopeptidase domain 17
Gm22766 12 21354354 to 21354452 98 + snRNA gene predicted gene, 22766
Cpgi4477 12 21373187 to 21374207 1020 CpG island CpG island 4477
Tssr115856 12 21373481 to 21373492 11 - TSS region transcription start site region 115856
Tssr115857 12 21373501 to 21373518 17 - TSS region transcription start site region 115857
Tssr115858 12 21373526 to 21373546 20 - TSS region transcription start site region 115858
Tssr115859 12 21373550 to 21373592 42 - TSS region transcription start site region 115859
Tssr115860 12 21373606 to 21373617 11 - TSS region transcription start site region 115860
Tssr112932 12 21373690 to 21373779 89 + TSS region transcription start site region 112932
Gm49586 12 21373765 to 21374196 431 + bidirectional promoter lncRNA gene predicted gene, 49586
Tssr112933 12 21374252 to 21374257 5 + TSS region transcription start site region 112933
Tssr115861 12 21384472 to 21384497 25 - TSS region transcription start site region 115861
Tssr115862 12 21389570 to 21389574 4 - TSS region transcription start site region 115862
Ywhaq 12 21390329 to 21417436 27107 - protein coding gene tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta
F630048H11Rik 12 21398603 to 21409360 10757 - unclassified gene RIKEN cDNA F630048H11 gene
Cpgi4478 12 21417102 to 21418072 970 CpG island CpG island 4478
Tssr115863 12 21417138 to 21417163 25 - TSS region transcription start site region 115863
Tssr112934 12 21417195 to 21417210 15 + TSS region transcription start site region 112934
Tssr115864 12 21417219 to 21417270 51 - TSS region transcription start site region 115864
Tssr112935 12 21417269 to 21417280 11 + TSS region transcription start site region 112935
Tssr115865 12 21417345 to 21417355 10 - TSS region transcription start site region 115865
Tssr115866 12 21417356 to 21417377 21 - TSS region transcription start site region 115866
Tssr115867 12 21417526 to 21417587 61 - TSS region transcription start site region 115867
Tssr115868 12 21417591 to 21417605 14 - TSS region transcription start site region 115868
Gm4419 12 21417707 to 21421064 3357 + antisense lncRNA gene predicted gene 4419
Tssr112936 12 21417872 to 21417887 15 + TSS region transcription start site region 112936
Tssr112937 12 21443276 to 21443278 2 + TSS region transcription start site region 112937
Tssr115869 12 21481719 to 21481727 8 - TSS region transcription start site region 115869
Tssr3810 12 21496468 to 21496477 9 + TSS region transcription start site region 3810
Tssr112938 12 21496513 to 21496519 6 + TSS region transcription start site region 112938
Gm31676 12 21542681 to 21543562 881 - lncRNA gene predicted gene, 31676
Cpgi4479 12 21543164 to 21543627 463 CpG island CpG island 4479
Tssr112939 12 21543275 to 21543281 6 + TSS region transcription start site region 112939
Tssr112940 12 21543284 to 21543315 31 + TSS region transcription start site region 112940
Gm19196 12 21545309 to 21554475 9166 + pseudogene predicted gene, 19196
Gm46314 12 21579341 to 21580679 1338 - pseudogene predicted gene, 46314
Tssr112941 12 21587203 to 21587211 8 + TSS region transcription start site region 112941
Gm18241 12 21600087 to 21603865 3778 - pseudogene predicted gene, 18241
Gm31624 12 21601121 to 21623215 22094 + lncRNA gene predicted gene, 31624
Gm4036 12 21624760 to 21630450 5690 - pseudogene predicted gene 4036
6030426L16Rik 12 21726822 to 21784557 57735 - unclassified gene RIKEN cDNA 6030426L16 gene
Gm46305 12 21758065 to 21759088 1023 - pseudogene predicted gene, 46305
Mrto4-ps2 12 21776159 to 21776707 548 - pseudogene mRNA turnover 4, pseudogene 2
Cpgi4480 12 21778277 to 21779272 995 CpG island CpG island 4480
Cpgi4481 12 21784286 to 21784803 517 CpG island CpG island 4481
Gm30195 12 21880203 to 21881100 897 - pseudogene predicted gene, 30195
Gm40857 12 21881923 to 21883606 1683 - lncRNA gene predicted gene, 40857
Cpgi4482 12 21899005 to 21899512 507 CpG island CpG island 4482
Gm9282 12 21954218 to 22030895 76677 - pseudogene predicted gene 9282
Gm40856 12 21994403 to 21996082 1679 - lncRNA gene predicted gene, 40856
Cpgi4483 12 22030348 to 22031136 788 CpG island CpG island 4483
Gm22908 12 22040913 to 22041022 109 + miRNA gene predicted gene, 22908
Gm9283 12 22090318 to 22096568 6250 - pseudogene predicted pseudogene 9283
D12Mit10a 12 22104848 to 22104978 130 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 10a
Gm4425 12 22115756 to 22156646 40890 - lincRNA gene predicted gene 4425
Gm9289 12 22203105 to 22208643 5538 - pseudogene predicted gene 9289
Gm4101 12 22244016 to 22252733 8717 - lncRNA gene predicted gene 4101
Gm20486 12 22274385 to 22274512 127 - pseudogene predicted gene 20486
Gm6838 12 22320382 to 22326042 5660 - pseudogene predicted gene 6838
Gm49248 12 22409487 to 22414924 5437 - pseudogene predicted gene, 49248
Gm10476 12 22414375 to 22467255 52880 - protein coding gene predicted gene 10476
Gm46340 12 22447150 to 22448347 1197 - protein coding gene predicted gene, 46340
Gm49251 12 22466586 to 22466718 132 - pseudogene predicted gene, 49251
Gm47997 12 22516453 to 22517317 864 - lincRNA gene predicted gene, 47997
Gm40865 12 22535833 to 22542225 6392 - lncRNA gene predicted gene, 40865
Gm48012 12 22552169 to 22555800 3631 + pseudogene predicted gene, 48012
Gm48016 12 22559021 to 22559201 180 + pseudogene predicted gene, 48016
Gm49377 12 22584129 to 22587635 3506 - pseudogene predicted gene, 49377
Gm40864 12 22585889 to 22623345 37456 - unclassified non-coding RNA gene predicted gene, 40864
Gm48019 12 22593133 to 22593240 107 + pseudogene predicted gene, 48019
Gm46341 12 22595203 to 22597810 2607 - lncRNA gene predicted gene, 46341
Gm48020 12 22597021 to 22597125 104 - pseudogene predicted gene, 48020
Gm17391 12 22622962 to 22623087 125 - pseudogene predicted gene, 17391
Gm48030 12 22631358 to 22631462 104 - pseudogene predicted gene, 48030
Gm48031 12 22666701 to 22666844 143 + pseudogene predicted gene, 48031
Gm48032 12 22667528 to 22667632 104 - pseudogene predicted gene, 48032
Gm48033 12 22670762 to 22671136 374 - pseudogene predicted gene, 48033
Gm21941 12 22696934 to 22698887 1953 - protein coding gene predicted gene, 21941
Gm38538 12 22723595 to 22745734 22139 - pseudogene predicted gene, 38538
Gm48035 12 22725142 to 22726590 1448 - pseudogene predicted gene, 48035
Cpgi4486 12 22745213 to 22746022 809 CpG island CpG island 4486
Gm48037 12 22745288 to 22745411 123 - pseudogene predicted gene, 48037
Gm20336 12 22829733 to 22833361 3628 - pseudogene predicted gene, 20336
Gm20327 12 22863943 to 22871682 7739 - pseudogene predicted gene, 20327
Gm48039 12 22877247 to 22877354 107 + pseudogene predicted gene, 48039
Gm48041 12 22882223 to 22882342 119 - pseudogene predicted gene, 48041
Gm48042 12 22906038 to 22906163 125 - pseudogene predicted gene, 48042
Cpgi4485 12 22906144 to 22906694 550 CpG island CpG island 4485
Gm48043 12 22914570 to 22914674 104 - pseudogene predicted gene, 48043
Gm49686 12 22953995 to 22960306 6311 - pseudogene predicted gene, 49686
2410018L13Rik 12 22953997 to 23010243 56246 - lincRNA gene RIKEN cDNA 2410018L13 gene
D12Mit282a 12 22954894 to 22955038 144 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 282a
Gm48044 12 22998355 to 22998468 113 + pseudogene predicted gene, 48044
Gm48046 12 23009845 to 23009967 122 - pseudogene predicted gene, 48046
Tssr115870 12 23010216 to 23010232 16 - TSS region transcription start site region 115870
Gm48064 12 23018708 to 23018812 104 - pseudogene predicted gene, 48064
Gm46310 12 23054129 to 23057545 3416 + protein coding gene predicted gene, 46310
Gm9293 12 23090034 to 23092498 2464 - lncRNA gene predicted gene 9293
Gm9292 12 23112535 to 23115584 3049 - pseudogene predicted gene 9292
Gm47383 12 23155957 to 23156064 107 + pseudogene predicted gene, 47383
Tssr112942 12 23163421 to 23163433 12 + TSS region transcription start site region 112942
Gm47384 12 23166335 to 23166454 119 - pseudogene predicted gene, 47384
Cpgi4484 12 23189167 to 23189941 774 CpG island CpG island 4484
Gm47385 12 23189273 to 23189398 125 - pseudogene predicted gene, 47385
Gm47386 12 23197376 to 23197495 119 - pseudogene predicted gene, 47386
Gm26140 12 23199780 to 23199889 109 + miRNA gene predicted gene, 26140
Gm9291 12 23249274 to 23255551 6277 - pseudogene predicted pseudogene 9291
D12Mit10b 12 23263851 to 23263965 114 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 10b
Gm20472 12 23276362 to 23315393 39031 - pseudogene predicted gene 20472
Gm20473 12 23338309 to 23338420 111 - pseudogene predicted gene 20473
Gm9285 12 23361795 to 23367424 5629 - pseudogene predicted gene 9285
Gm40862 12 23396445 to 23634845 238400 - protein coding gene predicted gene, 40862
Gm47393 12 23426757 to 23426883 126 - pseudogene predicted gene, 47393
Gm47420 12 23435217 to 23435328 111 - pseudogene predicted gene, 47420