Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:21091713-21290171

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21 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi4474 12 21111227 to 21112770 1543 CpG island CpG island 4474
Asap2 12 21111713 to 21270171 158458 + protein coding gene ArfGAP with SH3 domain, ankyrin repeat and PH domain 2
Tssr112922 12 21111720 to 21111776 56 + TSS region transcription start site region 112922
Tssr112923 12 21111778 to 21111809 31 + TSS region transcription start site region 112923
Tssr112924 12 21213040 to 21213060 20 + TSS region transcription start site region 112924
Tssr112925 12 21214874 to 21214878 4 + TSS region transcription start site region 112925
Tssr112926 12 21224286 to 21224323 37 + TSS region transcription start site region 112926
Gm40855 12 21240463 to 21250086 9623 - lncRNA gene predicted gene, 40855
Gm20535 12 21252118 to 21255952 3834 - unclassified non-coding RNA gene predicted gene 20535
Itgb1bp1 12 21267246 to 21286279 19033 - protein coding gene integrin beta 1 binding protein 1
Cpgi4475 12 21285603 to 21286643 1040 CpG island CpG island 4475
Tssr115852 12 21286116 to 21286162 46 - TSS region transcription start site region 115852
Tssr115853 12 21286176 to 21286268 92 - TSS region transcription start site region 115853
Tssr115854 12 21286287 to 21286298 11 - TSS region transcription start site region 115854
Tssr112927 12 21286288 to 21286299 11 + TSS region transcription start site region 112927
Cpsf3 12 21286297 to 21315056 28759 + protein coding gene cleavage and polyadenylation specificity factor 3
Tssr115855 12 21286307 to 21286327 20 - TSS region transcription start site region 115855
Tssr112928 12 21286308 to 21286329 21 + TSS region transcription start site region 112928
Tssr112929 12 21286336 to 21286451 115 + TSS region transcription start site region 112929
Tssr3809 12 21287510 to 21287514 4 + TSS region transcription start site region 3809
Gm25821 12 21287927 to 21288059 132 + snoRNA gene predicted gene, 25821