Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:20690538-21313056

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42 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm6626 12 20766349 to 20924161 157812 + lncRNA gene predicted gene 6626
1700030C10Rik 12 20804389 to 20815779 11390 - lncRNA gene RIKEN cDNA 1700030C10 gene
Gm28503 12 20804562 to 20804708 146 - pseudogene predicted gene 28503
Cpgi4470 12 20814904 to 20816162 1258 CpG island CpG island 4470
Tssr115846 12 20815545 to 20815558 13 - TSS region transcription start site region 115846
Tssr115847 12 20815718 to 20815733 15 - TSS region transcription start site region 115847
Tssr115848 12 20815751 to 20815775 24 - TSS region transcription start site region 115848
Cpgi4471 12 20845277 to 20845434 157 CpG island CpG island 4471
3110053B16Rik 12 20874125 to 20921262 47137 - pseudogene RIKEN cDNA 3110053B16 gene
Zfp125 12 20877084 to 20921262 44178 - protein coding gene zinc finger protein 125
Gm10478 12 20896239 to 20896638 399 - pseudogene predicted gene 10478
Cpgi4472 12 20920766 to 20921524 758 CpG island CpG island 4472
Tssr115849 12 20921045 to 20921083 38 - TSS region transcription start site region 115849
Tssr115850 12 20921218 to 20921236 18 - TSS region transcription start site region 115850
Tssr115851 12 20921255 to 20921273 18 - TSS region transcription start site region 115851
Gm30124 12 20987540 to 21015726 28186 + lincRNA gene predicted gene, 30124
Gm21989 12 20990538 to 21013056 22518 + unclassified non-coding RNA gene predicted gene 21989
Cpgi4473 12 20990624 to 20990923 299 CpG island CpG island 4473
Gm46306 12 21015817 to 21016648 831 + protein coding gene predicted gene, 46306
B230354O11Rik 12 21037170 to 21040420 3250 unclassified gene RIKEN cDNA B230354O11 gene
Gm5977 12 21042959 to 21048327 5368 + pseudogene predicted gene 5977
Cpgi4474 12 21111227 to 21112770 1543 CpG island CpG island 4474
Asap2 12 21111713 to 21270171 158458 + protein coding gene ArfGAP with SH3 domain, ankyrin repeat and PH domain 2
Tssr112922 12 21111720 to 21111776 56 + TSS region transcription start site region 112922
Tssr112923 12 21111778 to 21111809 31 + TSS region transcription start site region 112923
Tssr112924 12 21213040 to 21213060 20 + TSS region transcription start site region 112924
Tssr112925 12 21214874 to 21214878 4 + TSS region transcription start site region 112925
Tssr112926 12 21224286 to 21224323 37 + TSS region transcription start site region 112926
Gm40855 12 21240463 to 21250086 9623 - lncRNA gene predicted gene, 40855
Gm20535 12 21252118 to 21255952 3834 - unclassified non-coding RNA gene predicted gene 20535
Itgb1bp1 12 21267246 to 21286279 19033 - protein coding gene integrin beta 1 binding protein 1
Cpgi4475 12 21285603 to 21286643 1040 CpG island CpG island 4475
Tssr115852 12 21286116 to 21286162 46 - TSS region transcription start site region 115852
Tssr115853 12 21286176 to 21286268 92 - TSS region transcription start site region 115853
Tssr115854 12 21286287 to 21286298 11 - TSS region transcription start site region 115854
Tssr112927 12 21286288 to 21286299 11 + TSS region transcription start site region 112927
Cpsf3 12 21286297 to 21315056 28759 + protein coding gene cleavage and polyadenylation specificity factor 3
Tssr115855 12 21286307 to 21286327 20 - TSS region transcription start site region 115855
Tssr112928 12 21286308 to 21286329 21 + TSS region transcription start site region 112928
Tssr112929 12 21286336 to 21286451 115 + TSS region transcription start site region 112929
Tssr3809 12 21287510 to 21287514 4 + TSS region transcription start site region 3809
Gm25821 12 21287927 to 21288059 132 + snoRNA gene predicted gene, 25821