Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:20009517-21325194

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80 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm48647 12 20056153 to 20056306 153 + pseudogene predicted gene, 48647
Gm3993 12 20071570 to 20111705 40135 + protein coding gene predicted gene 3993
Gm49381 12 20071882 to 20072011 129 + pseudogene predicted gene, 49381
Gm38704 12 20084876 to 20087338 2462 + protein coding gene predicted gene, 38704
Gm9265 12 20111164 to 20144845 33681 + protein coding gene predicted gene 9265
Gm49382 12 20139163 to 20139529 366 + pseudogene predicted gene, 49382
Gm49692 12 20191900 to 20309078 117178 + unclassified non-coding RNA gene predicted gene, 49692
Cpgi4465 12 20196457 to 20196700 243 CpG island CpG island 4465
Tssr112920 12 20196656 to 20196675 19 + TSS region transcription start site region 112920
Gm48667 12 20196916 to 20197054 138 + pseudogene predicted gene, 48667
Cpgi4466 12 20230142 to 20230644 502 CpG island CpG island 4466
Cpgi4467 12 20232805 to 20234342 1537 CpG island CpG island 4467
Gm48668 12 20236016 to 20236118 102 - pseudogene predicted gene, 48668
Gm32719 12 20243269 to 20245918 2649 + protein coding gene predicted gene, 32719
Gm9269 12 20275039 to 20278028 2989 + pseudogene predicted gene 9269
Gm49690 12 20304292 to 20304447 155 + pseudogene predicted gene, 49690
Cpgi4468 12 20312072 to 20312748 676 CpG island CpG island 4468
Tssr112921 12 20312215 to 20312263 48 + TSS region transcription start site region 112921
Gm49697 12 20312515 to 20312640 125 + pseudogene predicted gene, 49697
Gm40881 12 20319605 to 20322795 3190 + protein coding gene predicted gene, 40881
Cpgi4469 12 20415475 to 20415938 463 CpG island CpG island 4469
Gm49929 12 20415937 to 20416075 138 + pseudogene predicted gene, 49929
Mrto4-ps1 12 20417722 to 20418442 720 + pseudogene mRNA turnover 4, pseudogene 1
Gm10479 12 20426913 to 20435417 8504 + lincRNA gene predicted gene 10479
Gm29758 12 20435161 to 20436318 1157 + protein coding gene predicted gene, 29758
Gm49698 12 20451675 to 20459211 7536 + lincRNA gene predicted gene, 49698
Gm48669 12 20512785 to 20512954 169 - pseudogene predicted gene, 48669
Gm4012 12 20545201 to 20550720 5519 + pseudogene predicted gene 4012
Gm48688 12 20606446 to 20606593 147 + pseudogene predicted gene, 48688
Gm48693 12 20615014 to 20664803 49789 + unclassified non-coding RNA gene predicted gene, 48693
Gm16476 12 20615302 to 20615440 138 + pseudogene predicted pseudogene 16476
Gm49700 12 20615343 to 20637948 22605 + lincRNA gene predicted gene, 49700
Gm49699 12 20664517 to 20670194 5677 + pseudogene predicted gene, 49699
Gm6626 12 20766349 to 20924161 157812 + lncRNA gene predicted gene 6626
1700030C10Rik 12 20804389 to 20815779 11390 - lncRNA gene RIKEN cDNA 1700030C10 gene
Gm28503 12 20804562 to 20804708 146 - pseudogene predicted gene 28503
Cpgi4470 12 20814904 to 20816162 1258 CpG island CpG island 4470
Tssr115846 12 20815545 to 20815558 13 - TSS region transcription start site region 115846
Tssr115847 12 20815718 to 20815733 15 - TSS region transcription start site region 115847
Tssr115848 12 20815751 to 20815775 24 - TSS region transcription start site region 115848
Cpgi4471 12 20845277 to 20845434 157 CpG island CpG island 4471
3110053B16Rik 12 20874125 to 20921262 47137 - pseudogene RIKEN cDNA 3110053B16 gene
Zfp125 12 20877084 to 20921262 44178 - protein coding gene zinc finger protein 125
Gm10478 12 20896239 to 20896638 399 - pseudogene predicted gene 10478
Cpgi4472 12 20920766 to 20921524 758 CpG island CpG island 4472
Tssr115849 12 20921045 to 20921083 38 - TSS region transcription start site region 115849
Tssr115850 12 20921218 to 20921236 18 - TSS region transcription start site region 115850
Tssr115851 12 20921255 to 20921273 18 - TSS region transcription start site region 115851
Gm30124 12 20987540 to 21015726 28186 + lincRNA gene predicted gene, 30124
Gm21989 12 20990538 to 21013056 22518 + unclassified non-coding RNA gene predicted gene 21989
Cpgi4473 12 20990624 to 20990923 299 CpG island CpG island 4473
Gm46306 12 21015817 to 21016648 831 + protein coding gene predicted gene, 46306
B230354O11Rik 12 21037170 to 21040420 3250 unclassified gene RIKEN cDNA B230354O11 gene
Gm5977 12 21042959 to 21048327 5368 + pseudogene predicted gene 5977
Cpgi4474 12 21111227 to 21112770 1543 CpG island CpG island 4474
Asap2 12 21111713 to 21270171 158458 + protein coding gene ArfGAP with SH3 domain, ankyrin repeat and PH domain 2
Tssr112922 12 21111720 to 21111776 56 + TSS region transcription start site region 112922
Tssr112923 12 21111778 to 21111809 31 + TSS region transcription start site region 112923
Tssr112924 12 21213040 to 21213060 20 + TSS region transcription start site region 112924
Tssr112925 12 21214874 to 21214878 4 + TSS region transcription start site region 112925
Tssr112926 12 21224286 to 21224323 37 + TSS region transcription start site region 112926
Gm40855 12 21240463 to 21250086 9623 - lncRNA gene predicted gene, 40855
Gm20535 12 21252118 to 21255952 3834 - unclassified non-coding RNA gene predicted gene 20535
Itgb1bp1 12 21267246 to 21286279 19033 - protein coding gene integrin beta 1 binding protein 1
Cpgi4475 12 21285603 to 21286643 1040 CpG island CpG island 4475
Tssr115852 12 21286116 to 21286162 46 - TSS region transcription start site region 115852
Tssr115853 12 21286176 to 21286268 92 - TSS region transcription start site region 115853
Tssr115854 12 21286287 to 21286298 11 - TSS region transcription start site region 115854
Tssr112927 12 21286288 to 21286299 11 + TSS region transcription start site region 112927
Cpsf3 12 21286297 to 21315056 28759 + protein coding gene cleavage and polyadenylation specificity factor 3
Tssr115855 12 21286307 to 21286327 20 - TSS region transcription start site region 115855
Tssr112928 12 21286308 to 21286329 21 + TSS region transcription start site region 112928
Tssr112929 12 21286336 to 21286451 115 + TSS region transcription start site region 112929
Tssr3809 12 21287510 to 21287514 4 + TSS region transcription start site region 3809
Gm25821 12 21287927 to 21288059 132 + snoRNA gene predicted gene, 25821
Cpgi4476 12 21316106 to 21316781 675 CpG island CpG island 4476
Iah1 12 21316361 to 21323607 7246 + protein coding gene isoamyl acetate-hydrolyzing esterase 1 homolog
Tssr112930 12 21316385 to 21316400 15 + TSS region transcription start site region 112930
Tssr112931 12 21316408 to 21316435 27 + TSS region transcription start site region 112931
Adam17 12 21323509 to 21373632 50123 - protein coding gene a disintegrin and metallopeptidase domain 17