Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:19404163-20874529

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77 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm5784 12 19387809 to 19433081 45272 + lincRNA gene predicted gene 5784
Gm29737 12 19408348 to 19408740 392 + pseudogene predicted gene, 29737
Gm49769 12 19434529 to 19435161 632 + lincRNA gene predicted gene, 49769
Gm3973 12 19490220 to 19526534 36314 + protein coding gene predicted gene 3973
Gm6802 12 19490308 to 19492290 1982 + pseudogene predicted gene 6802
Gm29738 12 19499267 to 19501361 2094 + protein coding gene predicted gene, 29738
Gm6943 12 19525993 to 19563094 37101 + protein coding gene predicted gene 6943
Gm49372 12 19554079 to 19556136 2057 + pseudogene predicted gene, 49372
Gm49371 12 19560110 to 19564157 4047 + lincRNA gene predicted gene, 49371
Gm48625 12 19598710 to 19598857 147 + pseudogene predicted gene, 48625
Cpgi4461 12 19606414 to 19607099 685 CpG island CpG island 4461
Gm9257 12 19606929 to 19623085 16156 + protein coding gene predicted gene 9257
Gm48635 12 19658046 to 19658434 388 + pseudogene predicted gene, 48635
Cpgi4462 12 19703716 to 19704583 867 CpG island CpG island 4462
Gm48636 12 19704294 to 19704567 273 + pseudogene predicted gene, 48636
Gm48637 12 19729035 to 19729143 108 - pseudogene predicted gene, 48637
Gm40880 12 19735185 to 19736969 1784 + lncRNA gene predicted gene, 40880
Gm46307 12 19739147 to 19753212 14065 + lncRNA gene predicted gene, 46307
Gm48638 12 19749733 to 19749882 149 - pseudogene predicted gene, 48638
D12Mit11 12 19794955 to 19795064 109 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 11
Gm48641 12 19816968 to 19817367 399 - pseudogene predicted gene, 48641
Gm38702 12 19824129 to 19882473 58344 - protein coding gene predicted gene, 38702
Gm9259 12 19824891 to 19830372 5481 - lncRNA gene predicted gene 9259
Gm48643 12 19865126 to 19865495 369 - pseudogene predicted gene, 48643
Gm46309 12 19866113 to 19867376 1263 - pseudogene predicted gene, 46309
Cpgi4463 12 19881841 to 19882808 967 CpG island CpG island 4463
Gm49379 12 19882154 to 19882320 166 - pseudogene predicted gene, 49379
Gm22189 12 19891976 to 19892061 85 + miRNA gene predicted gene, 22189
Gm48644 12 19949814 to 19950922 1108 - pseudogene predicted gene, 48644
Cpgi4464 12 19954130 to 19954664 534 CpG island CpG island 4464
Tssr112918 12 19954199 to 19954203 4 + TSS region transcription start site region 112918
Tssr112919 12 19954235 to 19954237 2 + TSS region transcription start site region 112919
Gm21863 12 19954505 to 19954840 335 + protein coding gene predicted gene, 21863
Gm48645 12 19968526 to 19968634 108 - pseudogene predicted gene, 48645
Gm40853 12 20002777 to 20008396 5619 + protein coding gene predicted gene, 40853
Gm48647 12 20056153 to 20056306 153 + pseudogene predicted gene, 48647
Gm3993 12 20071570 to 20111705 40135 + protein coding gene predicted gene 3993
Gm49381 12 20071882 to 20072011 129 + pseudogene predicted gene, 49381
Gm38704 12 20084876 to 20087338 2462 + protein coding gene predicted gene, 38704
Gm9265 12 20111164 to 20144845 33681 + protein coding gene predicted gene 9265
Gm49382 12 20139163 to 20139529 366 + pseudogene predicted gene, 49382
Gm49692 12 20191900 to 20309078 117178 + unclassified non-coding RNA gene predicted gene, 49692
Cpgi4465 12 20196457 to 20196700 243 CpG island CpG island 4465
Tssr112920 12 20196656 to 20196675 19 + TSS region transcription start site region 112920
Gm48667 12 20196916 to 20197054 138 + pseudogene predicted gene, 48667
Cpgi4466 12 20230142 to 20230644 502 CpG island CpG island 4466
Cpgi4467 12 20232805 to 20234342 1537 CpG island CpG island 4467
Gm48668 12 20236016 to 20236118 102 - pseudogene predicted gene, 48668
Gm32719 12 20243269 to 20245918 2649 + protein coding gene predicted gene, 32719
Gm9269 12 20275039 to 20278028 2989 + pseudogene predicted gene 9269
Gm49690 12 20304292 to 20304447 155 + pseudogene predicted gene, 49690
Cpgi4468 12 20312072 to 20312748 676 CpG island CpG island 4468
Tssr112921 12 20312215 to 20312263 48 + TSS region transcription start site region 112921
Gm49697 12 20312515 to 20312640 125 + pseudogene predicted gene, 49697
Gm40881 12 20319605 to 20322795 3190 + protein coding gene predicted gene, 40881
Cpgi4469 12 20415475 to 20415938 463 CpG island CpG island 4469
Gm49929 12 20415937 to 20416075 138 + pseudogene predicted gene, 49929
Mrto4-ps1 12 20417722 to 20418442 720 + pseudogene mRNA turnover 4, pseudogene 1
Gm10479 12 20426913 to 20435417 8504 + lincRNA gene predicted gene 10479
Gm29758 12 20435161 to 20436318 1157 + protein coding gene predicted gene, 29758
Gm49698 12 20451675 to 20459211 7536 + lincRNA gene predicted gene, 49698
Gm48669 12 20512785 to 20512954 169 - pseudogene predicted gene, 48669
Gm4012 12 20545201 to 20550720 5519 + pseudogene predicted gene 4012
Gm48688 12 20606446 to 20606593 147 + pseudogene predicted gene, 48688
Gm48693 12 20615014 to 20664803 49789 + unclassified non-coding RNA gene predicted gene, 48693
Gm16476 12 20615302 to 20615440 138 + pseudogene predicted pseudogene 16476
Gm49700 12 20615343 to 20637948 22605 + lincRNA gene predicted gene, 49700
Gm49699 12 20664517 to 20670194 5677 + pseudogene predicted gene, 49699
Gm6626 12 20766349 to 20924161 157812 + lncRNA gene predicted gene 6626
1700030C10Rik 12 20804389 to 20815779 11390 - lncRNA gene RIKEN cDNA 1700030C10 gene
Gm28503 12 20804562 to 20804708 146 - pseudogene predicted gene 28503
Cpgi4470 12 20814904 to 20816162 1258 CpG island CpG island 4470
Tssr115846 12 20815545 to 20815558 13 - TSS region transcription start site region 115846
Tssr115847 12 20815718 to 20815733 15 - TSS region transcription start site region 115847
Tssr115848 12 20815751 to 20815775 24 - TSS region transcription start site region 115848
Cpgi4471 12 20845277 to 20845434 157 CpG island CpG island 4471
3110053B16Rik 12 20874125 to 20921262 47137 - pseudogene RIKEN cDNA 3110053B16 gene