Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:17878840-19881503

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112 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm9222 12 17881151 to 18065627 184476 + unclassified gene predicted gene 9222
Cpgi4451 12 17881389 to 17882897 1508 CpG island CpG island 4451
Tssr112902 12 17881859 to 17881935 76 + TSS region transcription start site region 112902
Tssr112903 12 17881936 to 17881976 40 + TSS region transcription start site region 112903
Tssr115844 12 17882016 to 17882044 28 - TSS region transcription start site region 115844
Gm49326 12 17882197 to 17882322 125 + pseudogene predicted gene, 49326
Gm48315 12 17895312 to 17895472 160 - pseudogene predicted gene, 48315
Gm49329 12 17900734 to 18065610 164876 + pseudogene predicted gene, 49329
Gm49331 12 17902389 to 17904675 2286 + pseudogene predicted gene, 49331
B430203G13Rik 12 17924294 to 17925668 1374 + protein coding gene RIKEN cDNA B430203G13 gene
Gm49327 12 17933164 to 17939628 6464 + pseudogene predicted gene, 49327
Gm48317 12 17985000 to 17985097 97 + pseudogene predicted gene, 48317
Cpgi4452 12 17992643 to 17993145 502 CpG island CpG island 4452
Tssr112904 12 17992830 to 17992836 6 + TSS region transcription start site region 112904
Tssr112905 12 17992839 to 17992850 11 + TSS region transcription start site region 112905
Tssr112906 12 17992860 to 17992888 28 + TSS region transcription start site region 112906
Gm49330 12 17993133 to 17993258 125 + pseudogene predicted gene, 49330
Gm48319 12 18013612 to 18013714 102 + pseudogene predicted gene, 48319
Gm48318 12 18018493 to 18018640 147 - pseudogene predicted gene, 48318
Gm49328 12 18024067 to 18027467 3400 + pseudogene predicted gene, 49328
Gm46337 12 18066133 to 18070521 4388 + lncRNA gene predicted gene, 46337
Gm40850 12 18114420 to 18134437 20017 - lncRNA gene predicted gene, 40850
Gm48347 12 18123716 to 18123840 124 + pseudogene predicted gene, 48347
Cpgi4453 12 18135610 to 18136491 881 CpG island CpG island 4453
Tssr112907 12 18135905 to 18135922 17 + TSS region transcription start site region 112907
Tssr112908 12 18135931 to 18135945 14 + TSS region transcription start site region 112908
Gm9229 12 18136186 to 18136311 125 + protein coding gene predicted gene 9229
Gm48354 12 18143935 to 18144082 147 - pseudogene predicted gene, 48354
Gm48355 12 18186151 to 18191623 5472 + pseudogene predicted gene, 48355
Bnip3l-ps 12 18216542 to 18217673 1131 + pseudogene BCL2/adenovirus E1B interacting protein 3-like, pseudogene
Tssr112909 12 18217169 to 18217218 49 + TSS region transcription start site region 112909
Gm40879 12 18219929 to 18223712 3783 + pseudogene predicted gene, 40879
Gm19368 12 18227160 to 18239074 11914 - pseudogene predicted gene, 19368
Tssr3808 12 18229879 to 18229884 5 + TSS region transcription start site region 3808
Gm46312 12 18285572 to 18286534 962 + pseudogene predicted gene, 46312
Gm7093 12 18332873 to 18339043 6170 + pseudogene predicted gene 7093
Gm9231 12 18364462 to 18365470 1008 + pseudogene predicted gene 9231
Cpgi4454 12 18387214 to 18388076 862 CpG island CpG island 4454
Tssr112910 12 18387485 to 18387496 11 + TSS region transcription start site region 112910
Gm40848 12 18387755 to 18388078 323 + protein coding gene predicted gene, 40848
Cpgi4455 12 18390870 to 18391122 252 CpG island CpG island 4455
Tssr112911 12 18390907 to 18390910 3 + TSS region transcription start site region 112911
Gm48392 12 18505722 to 18505869 147 + pseudogene predicted gene, 48392
Cpgi4456 12 18514162 to 18514935 773 CpG island CpG island 4456
Tssr112912 12 18514465 to 18514486 21 + TSS region transcription start site region 112912
5730507C01Rik 12 18514510 to 18535254 20744 + protein coding gene RIKEN cDNA 5730507C01 gene
Gm19786 12 18559615 to 18565108 5493 + pseudogene predicted gene, 19786
Cpgi4457 12 18609855 to 18610773 918 CpG island CpG island 4457
Tssr112913 12 18610080 to 18610114 34 + TSS region transcription start site region 112913
Tssr112914 12 18610121 to 18610133 12 + TSS region transcription start site region 112914
Gm48398 12 18610384 to 18610600 216 + pseudogene predicted gene, 48398
Gm48409 12 18640932 to 18641025 93 - pseudogene predicted gene, 48409
Gm49760 12 18648214 to 18649998 1784 + pseudogene predicted gene, 49760
Gm9237 12 18681374 to 18684265 2891 + pseudogene predicted pseudogene 9237
Gm48411 12 18725260 to 18725413 153 + pseudogene predicted gene, 48411
Gm48446 12 18730269 to 18730308 39 - pseudogene predicted gene, 48446
Gm9241 12 18735821 to 18766375 30554 + pseudogene predicted gene 9241
Gm46313 12 18773494 to 18776375 2881 + pseudogene predicted gene, 46313
Gm40847 12 18853840 to 18906503 52663 + unclassified non-coding RNA gene predicted gene, 40847
Gm49370 12 18853871 to 18854005 134 + pseudogene predicted gene, 49370
Gm40846 12 18870811 to 18874494 3683 + pseudogene predicted gene, 40846
Gm46338 12 18905926 to 18911358 5432 + lincRNA gene predicted gene, 46338
Gm49764 12 18954199 to 18956598 2399 - lincRNA gene predicted gene, 49764
Gm48472 12 18973135 to 18973288 153 + pseudogene predicted gene, 48472
Gm9249 12 18991483 to 18997102 5619 + pseudogene predicted gene 9249
Gm48516 12 19036258 to 19036408 150 + pseudogene predicted gene, 48516
Gm40849 12 19044706 to 19055179 10473 + pseudogene predicted gene, 40849
Gm9158 12 19096320 to 19099220 2900 + pseudogene predicted gene 9158
Gm48523 12 19166959 to 19167112 153 + pseudogene predicted gene, 48523
Cpgi4458 12 19175660 to 19176379 719 CpG island CpG island 4458
Tssr115845 12 19175713 to 19175731 18 - TSS region transcription start site region 115845
Tssr112915 12 19175849 to 19175854 5 + TSS region transcription start site region 112915
Tssr112916 12 19175884 to 19175926 42 + TSS region transcription start site region 112916
Gm48525 12 19176103 to 19176229 126 + pseudogene predicted gene, 48525
Gm45961 12 19188626 to 19199771 11145 + protein coding gene predicted gene, 45961
Gm48528 12 19218082 to 19218575 493 + pseudogene predicted gene, 48528
Gm40843 12 19243920 to 19248478 4558 + lncRNA gene predicted gene, 40843
Cpgi4459 12 19288292 to 19289248 956 CpG island CpG island 4459
Tssr112917 12 19288478 to 19288524 46 + TSS region transcription start site region 112917
Gm5953 12 19288562 to 19291177 2615 + unclassified gene predicted gene 5953
Gm49957 12 19292813 to 19301264 8451 + lincRNA gene predicted gene, 49957
2610028L16Rik 12 19295295 to 19297447 2152 unclassified gene RIKEN cDNA 2610028L16 gene
Gm48540 12 19295769 to 19295877 108 - pseudogene predicted gene, 48540
Gm46339 12 19302803 to 19305185 2382 + protein coding gene predicted gene, 46339
Gm9255 12 19329058 to 19334616 5558 + pseudogene predicted pseudogene 9255
Gm48576 12 19379230 to 19379377 147 + pseudogene predicted gene, 48576
Gm5784 12 19387809 to 19433081 45272 + lincRNA gene predicted gene 5784
Cpgi4460 12 19388142 to 19388336 194 CpG island CpG island 4460
Gm29737 12 19408348 to 19408740 392 + pseudogene predicted gene, 29737
Gm49769 12 19434529 to 19435161 632 + lincRNA gene predicted gene, 49769
Gm3973 12 19490220 to 19526534 36314 + protein coding gene predicted gene 3973
Gm6802 12 19490308 to 19492290 1982 + pseudogene predicted gene 6802
Gm29738 12 19499267 to 19501361 2094 + protein coding gene predicted gene, 29738
Gm6943 12 19525993 to 19563094 37101 + protein coding gene predicted gene 6943
Gm49372 12 19554079 to 19556136 2057 + pseudogene predicted gene, 49372
Gm49371 12 19560110 to 19564157 4047 + lincRNA gene predicted gene, 49371
Gm48625 12 19598710 to 19598857 147 + pseudogene predicted gene, 48625
Cpgi4461 12 19606414 to 19607099 685 CpG island CpG island 4461
Gm9257 12 19606929 to 19623085 16156 + protein coding gene predicted gene 9257
Gm48635 12 19658046 to 19658434 388 + pseudogene predicted gene, 48635
Cpgi4462 12 19703716 to 19704583 867 CpG island CpG island 4462
Gm48636 12 19704294 to 19704567 273 + pseudogene predicted gene, 48636
Gm48637 12 19729035 to 19729143 108 - pseudogene predicted gene, 48637
Gm40880 12 19735185 to 19736969 1784 + lncRNA gene predicted gene, 40880
Gm46307 12 19739147 to 19753212 14065 + lncRNA gene predicted gene, 46307
Gm48638 12 19749733 to 19749882 149 - pseudogene predicted gene, 48638
D12Mit11 12 19794955 to 19795064 109 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 11
Gm48641 12 19816968 to 19817367 399 - pseudogene predicted gene, 48641
Gm38702 12 19824129 to 19882473 58344 - protein coding gene predicted gene, 38702
Gm9259 12 19824891 to 19830372 5481 - lncRNA gene predicted gene 9259
Gm48643 12 19865126 to 19865495 369 - pseudogene predicted gene, 48643
Gm46309 12 19866113 to 19867376 1263 - pseudogene predicted gene, 46309