Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:17727214-19048076

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81 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hpcal1 12 17690856 to 17791933 101077 + protein coding gene hippocalcin-like 1
A730046G19Rik 12 17727251 to 17730076 2825 unclassified gene RIKEN cDNA A730046G19 gene
Tssr112893 12 17727273 to 17727274 1 + TSS region transcription start site region 112893
Tssr112894 12 17728198 to 17728212 14 + TSS region transcription start site region 112894
Tssr112895 12 17728256 to 17728264 8 + TSS region transcription start site region 112895
Tssr112896 12 17732211 to 17732253 42 + TSS region transcription start site region 112896
Tssr115843 12 17737237 to 17737265 28 - TSS region transcription start site region 115843
Tssr112897 12 17748280 to 17748285 5 + TSS region transcription start site region 112897
Tssr112898 12 17755324 to 17755336 12 + TSS region transcription start site region 112898
Tssr112899 12 17765389 to 17765402 13 + TSS region transcription start site region 112899
Tssr3807 12 17786309 to 17786345 36 + TSS region transcription start site region 3807
Tssr112900 12 17786480 to 17786505 25 + TSS region transcription start site region 112900
Tssr112901 12 17791352 to 17791364 12 + TSS region transcription start site region 112901
Gm40312 12 17815155 to 17850723 35568 + lncRNA gene predicted gene, 40312
Gm9222 12 17881151 to 18065627 184476 + unclassified gene predicted gene 9222
Cpgi4451 12 17881389 to 17882897 1508 CpG island CpG island 4451
Tssr112902 12 17881859 to 17881935 76 + TSS region transcription start site region 112902
Tssr112903 12 17881936 to 17881976 40 + TSS region transcription start site region 112903
Tssr115844 12 17882016 to 17882044 28 - TSS region transcription start site region 115844
Gm49326 12 17882197 to 17882322 125 + pseudogene predicted gene, 49326
Gm48315 12 17895312 to 17895472 160 - pseudogene predicted gene, 48315
Gm49329 12 17900734 to 18065610 164876 + pseudogene predicted gene, 49329
Gm49331 12 17902389 to 17904675 2286 + pseudogene predicted gene, 49331
B430203G13Rik 12 17924294 to 17925668 1374 + protein coding gene RIKEN cDNA B430203G13 gene
Gm49327 12 17933164 to 17939628 6464 + pseudogene predicted gene, 49327
Gm48317 12 17985000 to 17985097 97 + pseudogene predicted gene, 48317
Cpgi4452 12 17992643 to 17993145 502 CpG island CpG island 4452
Tssr112904 12 17992830 to 17992836 6 + TSS region transcription start site region 112904
Tssr112905 12 17992839 to 17992850 11 + TSS region transcription start site region 112905
Tssr112906 12 17992860 to 17992888 28 + TSS region transcription start site region 112906
Gm49330 12 17993133 to 17993258 125 + pseudogene predicted gene, 49330
Gm48319 12 18013612 to 18013714 102 + pseudogene predicted gene, 48319
Gm48318 12 18018493 to 18018640 147 - pseudogene predicted gene, 48318
Gm49328 12 18024067 to 18027467 3400 + pseudogene predicted gene, 49328
Gm46337 12 18066133 to 18070521 4388 + lncRNA gene predicted gene, 46337
Gm40850 12 18114420 to 18134437 20017 - lncRNA gene predicted gene, 40850
Gm48347 12 18123716 to 18123840 124 + pseudogene predicted gene, 48347
Cpgi4453 12 18135610 to 18136491 881 CpG island CpG island 4453
Tssr112907 12 18135905 to 18135922 17 + TSS region transcription start site region 112907
Tssr112908 12 18135931 to 18135945 14 + TSS region transcription start site region 112908
Gm9229 12 18136186 to 18136311 125 + protein coding gene predicted gene 9229
Gm48354 12 18143935 to 18144082 147 - pseudogene predicted gene, 48354
Gm48355 12 18186151 to 18191623 5472 + pseudogene predicted gene, 48355
Bnip3l-ps 12 18216542 to 18217673 1131 + pseudogene BCL2/adenovirus E1B interacting protein 3-like, pseudogene
Tssr112909 12 18217169 to 18217218 49 + TSS region transcription start site region 112909
Gm40879 12 18219929 to 18223712 3783 + pseudogene predicted gene, 40879
Gm19368 12 18227160 to 18239074 11914 - pseudogene predicted gene, 19368
Tssr3808 12 18229879 to 18229884 5 + TSS region transcription start site region 3808
Gm46312 12 18285572 to 18286534 962 + pseudogene predicted gene, 46312
Gm7093 12 18332873 to 18339043 6170 + pseudogene predicted gene 7093
Gm9231 12 18364462 to 18365470 1008 + pseudogene predicted gene 9231
Cpgi4454 12 18387214 to 18388076 862 CpG island CpG island 4454
Tssr112910 12 18387485 to 18387496 11 + TSS region transcription start site region 112910
Gm40848 12 18387755 to 18388078 323 + protein coding gene predicted gene, 40848
Cpgi4455 12 18390870 to 18391122 252 CpG island CpG island 4455
Tssr112911 12 18390907 to 18390910 3 + TSS region transcription start site region 112911
Gm48392 12 18505722 to 18505869 147 + pseudogene predicted gene, 48392
Cpgi4456 12 18514162 to 18514935 773 CpG island CpG island 4456
Tssr112912 12 18514465 to 18514486 21 + TSS region transcription start site region 112912
5730507C01Rik 12 18514510 to 18535254 20744 + protein coding gene RIKEN cDNA 5730507C01 gene
Gm19786 12 18559615 to 18565108 5493 + pseudogene predicted gene, 19786
Cpgi4457 12 18609855 to 18610773 918 CpG island CpG island 4457
Tssr112913 12 18610080 to 18610114 34 + TSS region transcription start site region 112913
Tssr112914 12 18610121 to 18610133 12 + TSS region transcription start site region 112914
Gm48398 12 18610384 to 18610600 216 + pseudogene predicted gene, 48398
Gm48409 12 18640932 to 18641025 93 - pseudogene predicted gene, 48409
Gm49760 12 18648214 to 18649998 1784 + pseudogene predicted gene, 49760
Gm9237 12 18681374 to 18684265 2891 + pseudogene predicted pseudogene 9237
Gm48411 12 18725260 to 18725413 153 + pseudogene predicted gene, 48411
Gm48446 12 18730269 to 18730308 39 - pseudogene predicted gene, 48446
Gm9241 12 18735821 to 18766375 30554 + pseudogene predicted gene 9241
Gm46313 12 18773494 to 18776375 2881 + pseudogene predicted gene, 46313
Gm40847 12 18853840 to 18906503 52663 + unclassified non-coding RNA gene predicted gene, 40847
Gm49370 12 18853871 to 18854005 134 + pseudogene predicted gene, 49370
Gm40846 12 18870811 to 18874494 3683 + pseudogene predicted gene, 40846
Gm46338 12 18905926 to 18911358 5432 + lincRNA gene predicted gene, 46338
Gm49764 12 18954199 to 18956598 2399 - lincRNA gene predicted gene, 49764
Gm48472 12 18973135 to 18973288 153 + pseudogene predicted gene, 48472
Gm9249 12 18991483 to 18997102 5619 + pseudogene predicted gene 9249
Gm48516 12 19036258 to 19036408 150 + pseudogene predicted gene, 48516
Gm40849 12 19044706 to 19055179 10473 + pseudogene predicted gene, 40849