Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:17342214-19433076

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143 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm46336 12 17344401 to 17348373 3972 - bidirectional promoter lncRNA gene predicted gene, 46336
Cpgi4448 12 17348210 to 17348714 504 CpG island CpG island 4448
Tssr115838 12 17348373 to 17348419 46 - TSS region transcription start site region 115838
Tssr112878 12 17348422 to 17348526 104 + TSS region transcription start site region 112878
Nol10 12 17348458 to 17430095 81637 + protein coding gene nucleolar protein 10
Tssr112879 12 17354838 to 17354845 7 + TSS region transcription start site region 112879
Tssr112880 12 17354871 to 17354892 21 + TSS region transcription start site region 112880
Mir3066 12 17355392 to 17355474 82 + miRNA gene microRNA 3066
Tssr3805 12 17364943 to 17364945 2 + TSS region transcription start site region 3805
Tssr112881 12 17371059 to 17371063 4 + TSS region transcription start site region 112881
Tssr112882 12 17372922 to 17372956 34 + TSS region transcription start site region 112882
Tssr3806 12 17416359 to 17416362 3 + TSS region transcription start site region 3806
Gm36752 12 17436618 to 17445699 9081 + lincRNA gene predicted gene, 36752
Gm46325 12 17458324 to 17459317 993 - lncRNA gene predicted gene, 46325
Tssr115839 12 17507201 to 17507212 11 - TSS region transcription start site region 115839
Tssr115840 12 17507216 to 17507225 9 - TSS region transcription start site region 115840
Tssr112883 12 17542946 to 17542957 11 + TSS region transcription start site region 112883
Cpgi4449 12 17544231 to 17545584 1353 CpG island CpG island 4449
Tssr115841 12 17544586 to 17544605 19 - TSS region transcription start site region 115841
Tssr112884 12 17544706 to 17544722 16 + TSS region transcription start site region 112884
Tssr112885 12 17544860 to 17544892 32 + TSS region transcription start site region 112885
Odc1 12 17544867 to 17551502 6635 + protein coding gene ornithine decarboxylase, structural 1
Tssr112886 12 17544894 to 17544951 57 + TSS region transcription start site region 112886
Tssr112887 12 17544958 to 17544971 13 + TSS region transcription start site region 112887
Gm22748 12 17546146 to 17546281 135 + snoRNA gene predicted gene, 22748
D12Nds11 12 17546446 to 17546616 170 DNA segment DNA segment, Chr 12, Nuffield Department of Surgery 11
Lmblgq5 12 17546446 to 80910109 63363663 QTL limb length QTL 5
Tssr112888 12 17547692 to 17547714 22 + TSS region transcription start site region 112888
Gm36862 12 17556901 to 17565007 8106 + lncRNA gene predicted gene, 36862
Tssr112889 12 17557714 to 17557718 4 + TSS region transcription start site region 112889
Gm48290 12 17568478 to 17568849 371 - pseudogene predicted gene, 48290
Gm48313 12 17603249 to 17607231 3982 - lincRNA gene predicted gene, 48313
Gm25925 12 17644900 to 17645205 305 - unclassified non-coding RNA gene predicted gene, 25925
Gm29864 12 17663656 to 17674615 10959 - lncRNA gene predicted gene, 29864
Cpgi4450 12 17690247 to 17692173 1926 CpG island CpG island 4450
Tssr112890 12 17690793 to 17690823 30 + TSS region transcription start site region 112890
Tssr112891 12 17690827 to 17690858 31 + TSS region transcription start site region 112891
Hpcal1 12 17690856 to 17791933 101077 + protein coding gene hippocalcin-like 1
Tssr112892 12 17701993 to 17702036 43 + TSS region transcription start site region 112892
Gm40842 12 17711374 to 17721776 10402 + lncRNA gene predicted gene, 40842
Tssr115842 12 17715839 to 17715845 6 - TSS region transcription start site region 115842
A730046G19Rik 12 17727251 to 17730076 2825 unclassified gene RIKEN cDNA A730046G19 gene
Tssr112893 12 17727273 to 17727274 1 + TSS region transcription start site region 112893
Tssr112894 12 17728198 to 17728212 14 + TSS region transcription start site region 112894
Tssr112895 12 17728256 to 17728264 8 + TSS region transcription start site region 112895
Tssr112896 12 17732211 to 17732253 42 + TSS region transcription start site region 112896
Tssr115843 12 17737237 to 17737265 28 - TSS region transcription start site region 115843
Tssr112897 12 17748280 to 17748285 5 + TSS region transcription start site region 112897
Tssr112898 12 17755324 to 17755336 12 + TSS region transcription start site region 112898
Tssr112899 12 17765389 to 17765402 13 + TSS region transcription start site region 112899
Tssr3807 12 17786309 to 17786345 36 + TSS region transcription start site region 3807
Tssr112900 12 17786480 to 17786505 25 + TSS region transcription start site region 112900
Tssr112901 12 17791352 to 17791364 12 + TSS region transcription start site region 112901
Gm40312 12 17815155 to 17850723 35568 + lncRNA gene predicted gene, 40312
Gm9222 12 17881151 to 18065627 184476 + unclassified gene predicted gene 9222
Cpgi4451 12 17881389 to 17882897 1508 CpG island CpG island 4451
Tssr112902 12 17881859 to 17881935 76 + TSS region transcription start site region 112902
Tssr112903 12 17881936 to 17881976 40 + TSS region transcription start site region 112903
Tssr115844 12 17882016 to 17882044 28 - TSS region transcription start site region 115844
Gm49326 12 17882197 to 17882322 125 + pseudogene predicted gene, 49326
Gm48315 12 17895312 to 17895472 160 - pseudogene predicted gene, 48315
Gm49329 12 17900734 to 18065610 164876 + pseudogene predicted gene, 49329
Gm49331 12 17902389 to 17904675 2286 + pseudogene predicted gene, 49331
B430203G13Rik 12 17924294 to 17925668 1374 + protein coding gene RIKEN cDNA B430203G13 gene
Gm49327 12 17933164 to 17939628 6464 + pseudogene predicted gene, 49327
Gm48317 12 17985000 to 17985097 97 + pseudogene predicted gene, 48317
Cpgi4452 12 17992643 to 17993145 502 CpG island CpG island 4452
Tssr112904 12 17992830 to 17992836 6 + TSS region transcription start site region 112904
Tssr112905 12 17992839 to 17992850 11 + TSS region transcription start site region 112905
Tssr112906 12 17992860 to 17992888 28 + TSS region transcription start site region 112906
Gm49330 12 17993133 to 17993258 125 + pseudogene predicted gene, 49330
Gm48319 12 18013612 to 18013714 102 + pseudogene predicted gene, 48319
Gm48318 12 18018493 to 18018640 147 - pseudogene predicted gene, 48318
Gm49328 12 18024067 to 18027467 3400 + pseudogene predicted gene, 49328
Gm46337 12 18066133 to 18070521 4388 + lncRNA gene predicted gene, 46337
Gm40850 12 18114420 to 18134437 20017 - lncRNA gene predicted gene, 40850
Gm48347 12 18123716 to 18123840 124 + pseudogene predicted gene, 48347
Cpgi4453 12 18135610 to 18136491 881 CpG island CpG island 4453
Tssr112907 12 18135905 to 18135922 17 + TSS region transcription start site region 112907
Tssr112908 12 18135931 to 18135945 14 + TSS region transcription start site region 112908
Gm9229 12 18136186 to 18136311 125 + protein coding gene predicted gene 9229
Gm48354 12 18143935 to 18144082 147 - pseudogene predicted gene, 48354
Gm48355 12 18186151 to 18191623 5472 + pseudogene predicted gene, 48355
Bnip3l-ps 12 18216542 to 18217673 1131 + pseudogene BCL2/adenovirus E1B interacting protein 3-like, pseudogene
Tssr112909 12 18217169 to 18217218 49 + TSS region transcription start site region 112909
Gm40879 12 18219929 to 18223712 3783 + pseudogene predicted gene, 40879
Gm19368 12 18227160 to 18239074 11914 - pseudogene predicted gene, 19368
Tssr3808 12 18229879 to 18229884 5 + TSS region transcription start site region 3808
Gm46312 12 18285572 to 18286534 962 + pseudogene predicted gene, 46312
Gm7093 12 18332873 to 18339043 6170 + pseudogene predicted gene 7093
Gm9231 12 18364462 to 18365470 1008 + pseudogene predicted gene 9231
Cpgi4454 12 18387214 to 18388076 862 CpG island CpG island 4454
Tssr112910 12 18387485 to 18387496 11 + TSS region transcription start site region 112910
Gm40848 12 18387755 to 18388078 323 + protein coding gene predicted gene, 40848
Cpgi4455 12 18390870 to 18391122 252 CpG island CpG island 4455
Tssr112911 12 18390907 to 18390910 3 + TSS region transcription start site region 112911
Gm48392 12 18505722 to 18505869 147 + pseudogene predicted gene, 48392
Cpgi4456 12 18514162 to 18514935 773 CpG island CpG island 4456
Tssr112912 12 18514465 to 18514486 21 + TSS region transcription start site region 112912
5730507C01Rik 12 18514510 to 18535254 20744 + protein coding gene RIKEN cDNA 5730507C01 gene
Gm19786 12 18559615 to 18565108 5493 + pseudogene predicted gene, 19786
Cpgi4457 12 18609855 to 18610773 918 CpG island CpG island 4457
Tssr112913 12 18610080 to 18610114 34 + TSS region transcription start site region 112913
Tssr112914 12 18610121 to 18610133 12 + TSS region transcription start site region 112914
Gm48398 12 18610384 to 18610600 216 + pseudogene predicted gene, 48398
Gm48409 12 18640932 to 18641025 93 - pseudogene predicted gene, 48409
Gm49760 12 18648214 to 18649998 1784 + pseudogene predicted gene, 49760
Gm9237 12 18681374 to 18684265 2891 + pseudogene predicted pseudogene 9237
Gm48411 12 18725260 to 18725413 153 + pseudogene predicted gene, 48411
Gm48446 12 18730269 to 18730308 39 - pseudogene predicted gene, 48446
Gm9241 12 18735821 to 18766375 30554 + pseudogene predicted gene 9241
Gm46313 12 18773494 to 18776375 2881 + pseudogene predicted gene, 46313
Gm40847 12 18853840 to 18906503 52663 + unclassified non-coding RNA gene predicted gene, 40847
Gm49370 12 18853871 to 18854005 134 + pseudogene predicted gene, 49370
Gm40846 12 18870811 to 18874494 3683 + pseudogene predicted gene, 40846
Gm46338 12 18905926 to 18911358 5432 + lincRNA gene predicted gene, 46338
Gm49764 12 18954199 to 18956598 2399 - lincRNA gene predicted gene, 49764
Gm48472 12 18973135 to 18973288 153 + pseudogene predicted gene, 48472
Gm9249 12 18991483 to 18997102 5619 + pseudogene predicted gene 9249
Gm48516 12 19036258 to 19036408 150 + pseudogene predicted gene, 48516
Gm40849 12 19044706 to 19055179 10473 + pseudogene predicted gene, 40849
Gm9158 12 19096320 to 19099220 2900 + pseudogene predicted gene 9158
Gm48523 12 19166959 to 19167112 153 + pseudogene predicted gene, 48523
Cpgi4458 12 19175660 to 19176379 719 CpG island CpG island 4458
Tssr115845 12 19175713 to 19175731 18 - TSS region transcription start site region 115845
Tssr112915 12 19175849 to 19175854 5 + TSS region transcription start site region 112915
Tssr112916 12 19175884 to 19175926 42 + TSS region transcription start site region 112916
Gm48525 12 19176103 to 19176229 126 + pseudogene predicted gene, 48525
Gm45961 12 19188626 to 19199771 11145 + protein coding gene predicted gene, 45961
Gm48528 12 19218082 to 19218575 493 + pseudogene predicted gene, 48528
Gm40843 12 19243920 to 19248478 4558 + lncRNA gene predicted gene, 40843
Cpgi4459 12 19288292 to 19289248 956 CpG island CpG island 4459
Tssr112917 12 19288478 to 19288524 46 + TSS region transcription start site region 112917
Gm5953 12 19288562 to 19291177 2615 + unclassified gene predicted gene 5953
Gm49957 12 19292813 to 19301264 8451 + lincRNA gene predicted gene, 49957
2610028L16Rik 12 19295295 to 19297447 2152 unclassified gene RIKEN cDNA 2610028L16 gene
Gm48540 12 19295769 to 19295877 108 - pseudogene predicted gene, 48540
Gm46339 12 19302803 to 19305185 2382 + protein coding gene predicted gene, 46339
Gm9255 12 19329058 to 19334616 5558 + pseudogene predicted pseudogene 9255
Gm48576 12 19379230 to 19379377 147 + pseudogene predicted gene, 48576
Gm5784 12 19387809 to 19433081 45272 + lincRNA gene predicted gene 5784
Cpgi4460 12 19388142 to 19388336 194 CpG island CpG island 4460
Gm29737 12 19408348 to 19408740 392 + pseudogene predicted gene, 29737