Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:17305389-18225402

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90 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Atp6v1c2 12 17284721 to 17325386 40665 - protein coding gene ATPase, H+ transporting, lysosomal V1 subunit C2
Cpgi4447 12 17324160 to 17325229 1069 CpG island CpG island 4447
Tssr115836 12 17324722 to 17324736 14 - TSS region transcription start site region 115836
Tssr115837 12 17329366 to 17329369 3 - TSS region transcription start site region 115837
Gm46336 12 17344401 to 17348373 3972 - bidirectional promoter lncRNA gene predicted gene, 46336
Cpgi4448 12 17348210 to 17348714 504 CpG island CpG island 4448
Tssr115838 12 17348373 to 17348419 46 - TSS region transcription start site region 115838
Tssr112878 12 17348422 to 17348526 104 + TSS region transcription start site region 112878
Nol10 12 17348458 to 17430095 81637 + protein coding gene nucleolar protein 10
Tssr112879 12 17354838 to 17354845 7 + TSS region transcription start site region 112879
Tssr112880 12 17354871 to 17354892 21 + TSS region transcription start site region 112880
Mir3066 12 17355392 to 17355474 82 + miRNA gene microRNA 3066
Tssr3805 12 17364943 to 17364945 2 + TSS region transcription start site region 3805
Tssr112881 12 17371059 to 17371063 4 + TSS region transcription start site region 112881
Tssr112882 12 17372922 to 17372956 34 + TSS region transcription start site region 112882
Tssr3806 12 17416359 to 17416362 3 + TSS region transcription start site region 3806
Gm36752 12 17436618 to 17445699 9081 + lincRNA gene predicted gene, 36752
Gm46325 12 17458324 to 17459317 993 - lncRNA gene predicted gene, 46325
Tssr115839 12 17507201 to 17507212 11 - TSS region transcription start site region 115839
Tssr115840 12 17507216 to 17507225 9 - TSS region transcription start site region 115840
Tssr112883 12 17542946 to 17542957 11 + TSS region transcription start site region 112883
Cpgi4449 12 17544231 to 17545584 1353 CpG island CpG island 4449
Tssr115841 12 17544586 to 17544605 19 - TSS region transcription start site region 115841
Tssr112884 12 17544706 to 17544722 16 + TSS region transcription start site region 112884
Tssr112885 12 17544860 to 17544892 32 + TSS region transcription start site region 112885
Odc1 12 17544867 to 17551502 6635 + protein coding gene ornithine decarboxylase, structural 1
Tssr112886 12 17544894 to 17544951 57 + TSS region transcription start site region 112886
Tssr112887 12 17544958 to 17544971 13 + TSS region transcription start site region 112887
Gm22748 12 17546146 to 17546281 135 + snoRNA gene predicted gene, 22748
Lmblgq5 12 17546446 to 80910109 63363663 QTL limb length QTL 5
D12Nds11 12 17546446 to 17546616 170 DNA segment DNA segment, Chr 12, Nuffield Department of Surgery 11
Tssr112888 12 17547692 to 17547714 22 + TSS region transcription start site region 112888
Gm36862 12 17556901 to 17565007 8106 + lncRNA gene predicted gene, 36862
Tssr112889 12 17557714 to 17557718 4 + TSS region transcription start site region 112889
Gm48290 12 17568478 to 17568849 371 - pseudogene predicted gene, 48290
Gm48313 12 17603249 to 17607231 3982 - lincRNA gene predicted gene, 48313
Gm25925 12 17644900 to 17645205 305 - unclassified non-coding RNA gene predicted gene, 25925
Gm29864 12 17663656 to 17674615 10959 - lncRNA gene predicted gene, 29864
Cpgi4450 12 17690247 to 17692173 1926 CpG island CpG island 4450
Tssr112890 12 17690793 to 17690823 30 + TSS region transcription start site region 112890
Tssr112891 12 17690827 to 17690858 31 + TSS region transcription start site region 112891
Hpcal1 12 17690856 to 17791933 101077 + protein coding gene hippocalcin-like 1
Tssr112892 12 17701993 to 17702036 43 + TSS region transcription start site region 112892
Gm40842 12 17711374 to 17721776 10402 + lncRNA gene predicted gene, 40842
Tssr115842 12 17715839 to 17715845 6 - TSS region transcription start site region 115842
A730046G19Rik 12 17727251 to 17730076 2825 unclassified gene RIKEN cDNA A730046G19 gene
Tssr112893 12 17727273 to 17727274 1 + TSS region transcription start site region 112893
Tssr112894 12 17728198 to 17728212 14 + TSS region transcription start site region 112894
Tssr112895 12 17728256 to 17728264 8 + TSS region transcription start site region 112895
Tssr112896 12 17732211 to 17732253 42 + TSS region transcription start site region 112896
Tssr115843 12 17737237 to 17737265 28 - TSS region transcription start site region 115843
Tssr112897 12 17748280 to 17748285 5 + TSS region transcription start site region 112897
Tssr112898 12 17755324 to 17755336 12 + TSS region transcription start site region 112898
Tssr112899 12 17765389 to 17765402 13 + TSS region transcription start site region 112899
Tssr3807 12 17786309 to 17786345 36 + TSS region transcription start site region 3807
Tssr112900 12 17786480 to 17786505 25 + TSS region transcription start site region 112900
Tssr112901 12 17791352 to 17791364 12 + TSS region transcription start site region 112901
Gm40312 12 17815155 to 17850723 35568 + lncRNA gene predicted gene, 40312
Gm9222 12 17881151 to 18065627 184476 + unclassified gene predicted gene 9222
Cpgi4451 12 17881389 to 17882897 1508 CpG island CpG island 4451
Tssr112902 12 17881859 to 17881935 76 + TSS region transcription start site region 112902
Tssr112903 12 17881936 to 17881976 40 + TSS region transcription start site region 112903
Tssr115844 12 17882016 to 17882044 28 - TSS region transcription start site region 115844
Gm49326 12 17882197 to 17882322 125 + pseudogene predicted gene, 49326
Gm48315 12 17895312 to 17895472 160 - pseudogene predicted gene, 48315
Gm49329 12 17900734 to 18065610 164876 + pseudogene predicted gene, 49329
Gm49331 12 17902389 to 17904675 2286 + pseudogene predicted gene, 49331
B430203G13Rik 12 17924294 to 17925668 1374 + protein coding gene RIKEN cDNA B430203G13 gene
Gm49327 12 17933164 to 17939628 6464 + pseudogene predicted gene, 49327
Gm48317 12 17985000 to 17985097 97 + pseudogene predicted gene, 48317
Cpgi4452 12 17992643 to 17993145 502 CpG island CpG island 4452
Tssr112904 12 17992830 to 17992836 6 + TSS region transcription start site region 112904
Tssr112905 12 17992839 to 17992850 11 + TSS region transcription start site region 112905
Tssr112906 12 17992860 to 17992888 28 + TSS region transcription start site region 112906
Gm49330 12 17993133 to 17993258 125 + pseudogene predicted gene, 49330
Gm48319 12 18013612 to 18013714 102 + pseudogene predicted gene, 48319
Gm48318 12 18018493 to 18018640 147 - pseudogene predicted gene, 48318
Gm49328 12 18024067 to 18027467 3400 + pseudogene predicted gene, 49328
Gm46337 12 18066133 to 18070521 4388 + lncRNA gene predicted gene, 46337
Gm40850 12 18114420 to 18134437 20017 - lncRNA gene predicted gene, 40850
Gm48347 12 18123716 to 18123840 124 + pseudogene predicted gene, 48347
Cpgi4453 12 18135610 to 18136491 881 CpG island CpG island 4453
Tssr112907 12 18135905 to 18135922 17 + TSS region transcription start site region 112907
Tssr112908 12 18135931 to 18135945 14 + TSS region transcription start site region 112908
Gm9229 12 18136186 to 18136311 125 + protein coding gene predicted gene 9229
Gm48354 12 18143935 to 18144082 147 - pseudogene predicted gene, 48354
Gm48355 12 18186151 to 18191623 5472 + pseudogene predicted gene, 48355
Bnip3l-ps 12 18216542 to 18217673 1131 + pseudogene BCL2/adenovirus E1B interacting protein 3-like, pseudogene
Tssr112909 12 18217169 to 18217218 49 + TSS region transcription start site region 112909
Gm40879 12 18219929 to 18223712 3783 + pseudogene predicted gene, 40879