Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:16851954-17501965

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65 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr3804 12 16853560 to 16853574 14 + TSS region transcription start site region 3804
Tssr115826 12 16875841 to 16875851 10 - TSS region transcription start site region 115826
Cpgi4442 12 16894068 to 16895741 1673 CpG island CpG island 4442
Tssr115827 12 16894684 to 16894725 41 - TSS region transcription start site region 115827
Tssr112861 12 16894827 to 16894887 60 + TSS region transcription start site region 112861
Tssr112862 12 16894894 to 16894904 10 + TSS region transcription start site region 112862
Rock2 12 16894895 to 16987823 92928 + protein coding gene Rho-associated coiled-coil containing protein kinase 2
Tssr112863 12 16895082 to 16895090 8 + TSS region transcription start site region 112863
Tssr112864 12 16895117 to 16895132 15 + TSS region transcription start site region 112864
Tssr112865 12 16904962 to 16904987 25 + TSS region transcription start site region 112865
Tssr112866 12 16909482 to 16909485 3 + TSS region transcription start site region 112866
Tssr112867 12 16910469 to 16910474 5 + TSS region transcription start site region 112867
Gm48291 12 16921987 to 16922305 318 - pseudogene predicted gene, 48291
Gm22303 12 16939994 to 16940115 121 + snoRNA gene predicted gene, 22303
Tssr112868 12 16942833 to 16942887 54 + TSS region transcription start site region 112868
Tssr112869 12 16958689 to 16958703 14 + TSS region transcription start site region 112869
Tssr112870 12 16965035 to 16965065 30 + TSS region transcription start site region 112870
Tssr112871 12 16965122 to 16965155 33 + TSS region transcription start site region 112871
Tssr112872 12 16965490 to 16965565 75 + TSS region transcription start site region 112872
Tssr112873 12 16966168 to 16966179 11 + TSS region transcription start site region 112873
Pqlc3 12 16988648 to 17000408 11760 - protein coding gene PQ loop repeat containing
Cpgi4443 12 16999636 to 17000513 877 CpG island CpG island 4443
Tssr115828 12 16999964 to 16999977 13 - TSS region transcription start site region 115828
Tssr115829 12 16999991 to 17000071 80 - TSS region transcription start site region 115829
Tssr115830 12 17000108 to 17000122 14 - TSS region transcription start site region 115830
Tssr115831 12 17000330 to 17000354 24 - TSS region transcription start site region 115831
2410004P03Rik 12 17004958 to 17011734 6776 - protein coding gene RIKEN cDNA 2410004P03 gene
Cpgi4444 12 17011424 to 17011754 330 CpG island CpG island 4444
Tssr115832 12 17011512 to 17011561 49 - TSS region transcription start site region 115832
Tssr112874 12 17033708 to 17033715 7 + TSS region transcription start site region 112874
D12Mit58 12 17038020 to 17038137 117 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 58
Gm48538 12 17065413 to 17074550 9137 + lincRNA gene predicted gene, 48538
Kcnf1 12 17172100 to 17176888 4788 - protein coding gene potassium voltage-gated channel, subfamily F, member 1
Cpgi4445 12 17175120 to 17176886 1766 CpG island CpG island 4445
Tssr115833 12 17176544 to 17176557 13 - TSS region transcription start site region 115833
Tssr115834 12 17176574 to 17176587 13 - TSS region transcription start site region 115834
Tssr115835 12 17176954 to 17176965 11 - TSS region transcription start site region 115835
Gm36568 12 17183862 to 17228053 44191 - lncRNA gene predicted gene, 36568
D12Dcr11 12 17218271 to 17218366 95 DNA segment DNA Segment, Chr 12, Derry C. Roopenian 11
Gm10054 12 17233612 to 17234042 430 + pseudogene predicted gene 10054
Cpgi4446 12 17266281 to 17267064 783 CpG island CpG island 4446
Tssr112875 12 17266571 to 17266601 30 + TSS region transcription start site region 112875
Pdia6 12 17266595 to 17284770 18175 + protein coding gene protein disulfide isomerase associated 6
Tssr112876 12 17266609 to 17266618 9 + TSS region transcription start site region 112876
Tssr112877 12 17274448 to 17274465 17 + TSS region transcription start site region 112877
Atp6v1c2 12 17284721 to 17325386 40665 - protein coding gene ATPase, H+ transporting, lysosomal V1 subunit C2
D12Mit291 12 17290133 to 17290301 168 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 291
Nbwa1 12 17290133 to 17290301 168 QTL NZB and NZW autoimmunity 1
Cpgi4447 12 17324160 to 17325229 1069 CpG island CpG island 4447
Tssr115836 12 17324722 to 17324736 14 - TSS region transcription start site region 115836
Tssr115837 12 17329366 to 17329369 3 - TSS region transcription start site region 115837
Gm46336 12 17344401 to 17348373 3972 - bidirectional promoter lncRNA gene predicted gene, 46336
Cpgi4448 12 17348210 to 17348714 504 CpG island CpG island 4448
Tssr115838 12 17348373 to 17348419 46 - TSS region transcription start site region 115838
Tssr112878 12 17348422 to 17348526 104 + TSS region transcription start site region 112878
Nol10 12 17348458 to 17430095 81637 + protein coding gene nucleolar protein 10
Tssr112879 12 17354838 to 17354845 7 + TSS region transcription start site region 112879
Tssr112880 12 17354871 to 17354892 21 + TSS region transcription start site region 112880
Mir3066 12 17355392 to 17355474 82 + miRNA gene microRNA 3066
Tssr3805 12 17364943 to 17364945 2 + TSS region transcription start site region 3805
Tssr112881 12 17371059 to 17371063 4 + TSS region transcription start site region 112881
Tssr112882 12 17372922 to 17372956 34 + TSS region transcription start site region 112882
Tssr3806 12 17416359 to 17416362 3 + TSS region transcription start site region 3806
Gm36752 12 17436618 to 17445699 9081 + lincRNA gene predicted gene, 36752
Gm46325 12 17458324 to 17459317 993 - lncRNA gene predicted gene, 46325