Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:16646609-17886618

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156 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr115809 12 16646957 to 16646975 18 - TSS region transcription start site region 115809
Tssr115810 12 16646991 to 16647002 11 - TSS region transcription start site region 115810
Tssr115811 12 16647007 to 16647019 12 - TSS region transcription start site region 115811
Cpgi4439 12 16653283 to 16654171 888 CpG island CpG island 4439
Ntsr2 12 16653451 to 16660236 6785 + protein coding gene neurotensin receptor 2
Tssr112846 12 16653475 to 16653486 11 + TSS region transcription start site region 112846
Tssr112847 12 16653533 to 16653544 11 + TSS region transcription start site region 112847
Tssr112848 12 16653569 to 16653583 14 + TSS region transcription start site region 112848
Tssr112849 12 16653604 to 16653628 24 + TSS region transcription start site region 112849
Tssr112850 12 16653709 to 16653763 54 + TSS region transcription start site region 112850
Tssr112851 12 16653768 to 16653775 7 + TSS region transcription start site region 112851
Tssr112852 12 16653797 to 16653808 11 + TSS region transcription start site region 112852
Tssr112853 12 16653903 to 16653976 73 + TSS region transcription start site region 112853
Tssr112854 12 16653988 to 16654003 15 + TSS region transcription start site region 112854
Tssr112855 12 16656304 to 16656310 6 + TSS region transcription start site region 112855
Tssr115812 12 16657275 to 16657279 4 - TSS region transcription start site region 115812
Tssr112856 12 16657902 to 16657917 15 + TSS region transcription start site region 112856
Tssr112857 12 16657969 to 16657978 9 + TSS region transcription start site region 112857
Greb1 12 16670615 to 16800886 130271 - protein coding gene gene regulated by estrogen in breast cancer protein
Gm48140 12 16672240 to 16685013 12773 + antisense lncRNA gene predicted gene, 48140
Tssr3803 12 16672275 to 16672303 28 + TSS region transcription start site region 3803
Tssr115813 12 16740203 to 16740257 54 - TSS region transcription start site region 115813
D12Mit269 12 16749234 to 16749351 117 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 269
Tssr115814 12 16753194 to 16753208 14 - TSS region transcription start site region 115814
Tssr115815 12 16753279 to 16753290 11 - TSS region transcription start site region 115815
Tssr115816 12 16753311 to 16753318 7 - TSS region transcription start site region 115816
D12Mit184 12 16757496 to 16757624 128 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 184
Gm44305 12 16767127 to 16767223 96 - miRNA gene predicted gene, 44305
Tssr115817 12 16788666 to 16788678 12 - TSS region transcription start site region 115817
Tssr115818 12 16790208 to 16790210 2 - TSS region transcription start site region 115818
Cpgi4440 12 16800126 to 16801187 1061 CpG island CpG island 4440
Tssr115819 12 16800528 to 16800540 12 - TSS region transcription start site region 115819
Tssr115820 12 16800674 to 16800705 31 - TSS region transcription start site region 115820
Tssr115821 12 16800896 to 16800931 35 - TSS region transcription start site region 115821
Tssr115822 12 16800944 to 16800955 11 - TSS region transcription start site region 115822
Tssr115823 12 16800960 to 16800971 11 - TSS region transcription start site region 115823
Tssr115824 12 16800973 to 16801014 41 - TSS region transcription start site region 115824
Gm48227 12 16801768 to 16802634 866 - lincRNA gene predicted gene, 48227
Cpgi4441 12 16810594 to 16811823 1229 CpG island CpG island 4441
E2f6 12 16810903 to 16826752 15849 + protein coding gene E2F transcription factor 6
Tssr112858 12 16810940 to 16810978 38 + TSS region transcription start site region 112858
Tssr112859 12 16810979 to 16810990 11 + TSS region transcription start site region 112859
Tssr112860 12 16812391 to 16812395 4 + TSS region transcription start site region 112860
Gm36495 12 16844881 to 16850881 6000 - lincRNA gene predicted gene, 36495
Tssr115825 12 16850718 to 16850757 39 - TSS region transcription start site region 115825
Tssr3804 12 16853560 to 16853574 14 + TSS region transcription start site region 3804
Tssr115826 12 16875841 to 16875851 10 - TSS region transcription start site region 115826
Cpgi4442 12 16894068 to 16895741 1673 CpG island CpG island 4442
Tssr115827 12 16894684 to 16894725 41 - TSS region transcription start site region 115827
Tssr112861 12 16894827 to 16894887 60 + TSS region transcription start site region 112861
Tssr112862 12 16894894 to 16894904 10 + TSS region transcription start site region 112862
Rock2 12 16894895 to 16987823 92928 + protein coding gene Rho-associated coiled-coil containing protein kinase 2
Tssr112863 12 16895082 to 16895090 8 + TSS region transcription start site region 112863
Tssr112864 12 16895117 to 16895132 15 + TSS region transcription start site region 112864
Tssr112865 12 16904962 to 16904987 25 + TSS region transcription start site region 112865
Tssr112866 12 16909482 to 16909485 3 + TSS region transcription start site region 112866
Tssr112867 12 16910469 to 16910474 5 + TSS region transcription start site region 112867
Gm48291 12 16921987 to 16922305 318 - pseudogene predicted gene, 48291
Gm22303 12 16939994 to 16940115 121 + snoRNA gene predicted gene, 22303
Tssr112868 12 16942833 to 16942887 54 + TSS region transcription start site region 112868
Tssr112869 12 16958689 to 16958703 14 + TSS region transcription start site region 112869
Tssr112870 12 16965035 to 16965065 30 + TSS region transcription start site region 112870
Tssr112871 12 16965122 to 16965155 33 + TSS region transcription start site region 112871
Tssr112872 12 16965490 to 16965565 75 + TSS region transcription start site region 112872
Tssr112873 12 16966168 to 16966179 11 + TSS region transcription start site region 112873
Pqlc3 12 16988648 to 17000408 11760 - protein coding gene PQ loop repeat containing
Cpgi4443 12 16999636 to 17000513 877 CpG island CpG island 4443
Tssr115828 12 16999964 to 16999977 13 - TSS region transcription start site region 115828
Tssr115829 12 16999991 to 17000071 80 - TSS region transcription start site region 115829
Tssr115830 12 17000108 to 17000122 14 - TSS region transcription start site region 115830
Tssr115831 12 17000330 to 17000354 24 - TSS region transcription start site region 115831
2410004P03Rik 12 17004958 to 17011734 6776 - protein coding gene RIKEN cDNA 2410004P03 gene
Cpgi4444 12 17011424 to 17011754 330 CpG island CpG island 4444
Tssr115832 12 17011512 to 17011561 49 - TSS region transcription start site region 115832
Tssr112874 12 17033708 to 17033715 7 + TSS region transcription start site region 112874
D12Mit58 12 17038020 to 17038137 117 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 58
Gm48538 12 17065413 to 17074550 9137 + lincRNA gene predicted gene, 48538
Kcnf1 12 17172100 to 17176888 4788 - protein coding gene potassium voltage-gated channel, subfamily F, member 1
Cpgi4445 12 17175120 to 17176886 1766 CpG island CpG island 4445
Tssr115833 12 17176544 to 17176557 13 - TSS region transcription start site region 115833
Tssr115834 12 17176574 to 17176587 13 - TSS region transcription start site region 115834
Tssr115835 12 17176954 to 17176965 11 - TSS region transcription start site region 115835
Gm36568 12 17183862 to 17228053 44191 - lncRNA gene predicted gene, 36568
D12Dcr11 12 17218271 to 17218366 95 DNA segment DNA Segment, Chr 12, Derry C. Roopenian 11
Gm10054 12 17233612 to 17234042 430 + pseudogene predicted gene 10054
Cpgi4446 12 17266281 to 17267064 783 CpG island CpG island 4446
Tssr112875 12 17266571 to 17266601 30 + TSS region transcription start site region 112875
Pdia6 12 17266595 to 17284770 18175 + protein coding gene protein disulfide isomerase associated 6
Tssr112876 12 17266609 to 17266618 9 + TSS region transcription start site region 112876
Tssr112877 12 17274448 to 17274465 17 + TSS region transcription start site region 112877
Atp6v1c2 12 17284721 to 17325386 40665 - protein coding gene ATPase, H+ transporting, lysosomal V1 subunit C2
D12Mit291 12 17290133 to 17290301 168 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 291
Nbwa1 12 17290133 to 17290301 168 QTL NZB and NZW autoimmunity 1
Cpgi4447 12 17324160 to 17325229 1069 CpG island CpG island 4447
Tssr115836 12 17324722 to 17324736 14 - TSS region transcription start site region 115836
Tssr115837 12 17329366 to 17329369 3 - TSS region transcription start site region 115837
Gm46336 12 17344401 to 17348373 3972 - bidirectional promoter lncRNA gene predicted gene, 46336
Cpgi4448 12 17348210 to 17348714 504 CpG island CpG island 4448
Tssr115838 12 17348373 to 17348419 46 - TSS region transcription start site region 115838
Tssr112878 12 17348422 to 17348526 104 + TSS region transcription start site region 112878
Nol10 12 17348458 to 17430095 81637 + protein coding gene nucleolar protein 10
Tssr112879 12 17354838 to 17354845 7 + TSS region transcription start site region 112879
Tssr112880 12 17354871 to 17354892 21 + TSS region transcription start site region 112880
Mir3066 12 17355392 to 17355474 82 + miRNA gene microRNA 3066
Tssr3805 12 17364943 to 17364945 2 + TSS region transcription start site region 3805
Tssr112881 12 17371059 to 17371063 4 + TSS region transcription start site region 112881
Tssr112882 12 17372922 to 17372956 34 + TSS region transcription start site region 112882
Tssr3806 12 17416359 to 17416362 3 + TSS region transcription start site region 3806
Gm36752 12 17436618 to 17445699 9081 + lincRNA gene predicted gene, 36752
Gm46325 12 17458324 to 17459317 993 - lncRNA gene predicted gene, 46325
Tssr115839 12 17507201 to 17507212 11 - TSS region transcription start site region 115839
Tssr115840 12 17507216 to 17507225 9 - TSS region transcription start site region 115840
Tssr112883 12 17542946 to 17542957 11 + TSS region transcription start site region 112883
Cpgi4449 12 17544231 to 17545584 1353 CpG island CpG island 4449
Tssr115841 12 17544586 to 17544605 19 - TSS region transcription start site region 115841
Tssr112884 12 17544706 to 17544722 16 + TSS region transcription start site region 112884
Tssr112885 12 17544860 to 17544892 32 + TSS region transcription start site region 112885
Odc1 12 17544867 to 17551502 6635 + protein coding gene ornithine decarboxylase, structural 1
Tssr112886 12 17544894 to 17544951 57 + TSS region transcription start site region 112886
Tssr112887 12 17544958 to 17544971 13 + TSS region transcription start site region 112887
Gm22748 12 17546146 to 17546281 135 + snoRNA gene predicted gene, 22748
D12Nds11 12 17546446 to 17546616 170 DNA segment DNA segment, Chr 12, Nuffield Department of Surgery 11
Lmblgq5 12 17546446 to 80910109 63363663 QTL limb length QTL 5
Tssr112888 12 17547692 to 17547714 22 + TSS region transcription start site region 112888
Gm36862 12 17556901 to 17565007 8106 + lncRNA gene predicted gene, 36862
Tssr112889 12 17557714 to 17557718 4 + TSS region transcription start site region 112889
Gm48290 12 17568478 to 17568849 371 - pseudogene predicted gene, 48290
Gm48313 12 17603249 to 17607231 3982 - lincRNA gene predicted gene, 48313
Gm25925 12 17644900 to 17645205 305 - unclassified non-coding RNA gene predicted gene, 25925
Gm29864 12 17663656 to 17674615 10959 - lncRNA gene predicted gene, 29864
Cpgi4450 12 17690247 to 17692173 1926 CpG island CpG island 4450
Tssr112890 12 17690793 to 17690823 30 + TSS region transcription start site region 112890
Tssr112891 12 17690827 to 17690858 31 + TSS region transcription start site region 112891
Hpcal1 12 17690856 to 17791933 101077 + protein coding gene hippocalcin-like 1
Tssr112892 12 17701993 to 17702036 43 + TSS region transcription start site region 112892
Gm40842 12 17711374 to 17721776 10402 + lncRNA gene predicted gene, 40842
Tssr115842 12 17715839 to 17715845 6 - TSS region transcription start site region 115842
A730046G19Rik 12 17727251 to 17730076 2825 unclassified gene RIKEN cDNA A730046G19 gene
Tssr112893 12 17727273 to 17727274 1 + TSS region transcription start site region 112893
Tssr112894 12 17728198 to 17728212 14 + TSS region transcription start site region 112894
Tssr112895 12 17728256 to 17728264 8 + TSS region transcription start site region 112895
Tssr112896 12 17732211 to 17732253 42 + TSS region transcription start site region 112896
Tssr115843 12 17737237 to 17737265 28 - TSS region transcription start site region 115843
Tssr112897 12 17748280 to 17748285 5 + TSS region transcription start site region 112897
Tssr112898 12 17755324 to 17755336 12 + TSS region transcription start site region 112898
Tssr112899 12 17765389 to 17765402 13 + TSS region transcription start site region 112899
Tssr3807 12 17786309 to 17786345 36 + TSS region transcription start site region 3807
Tssr112900 12 17786480 to 17786505 25 + TSS region transcription start site region 112900
Tssr112901 12 17791352 to 17791364 12 + TSS region transcription start site region 112901
Gm40312 12 17815155 to 17850723 35568 + lncRNA gene predicted gene, 40312
Gm9222 12 17881151 to 18065627 184476 + unclassified gene predicted gene 9222
Cpgi4451 12 17881389 to 17882897 1508 CpG island CpG island 4451
Tssr112902 12 17881859 to 17881935 76 + TSS region transcription start site region 112902
Tssr112903 12 17881936 to 17881976 40 + TSS region transcription start site region 112903
Tssr115844 12 17882016 to 17882044 28 - TSS region transcription start site region 115844
Gm49326 12 17882197 to 17882322 125 + pseudogene predicted gene, 49326