Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:15914723-17264735

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120 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr112841 12 15929613 to 15929633 20 + TSS region transcription start site region 112841
Gm48584 12 15976264 to 15980488 4224 - lincRNA gene predicted gene, 48584
Gm36235 12 15998768 to 16015526 16758 - lincRNA gene predicted gene, 36235
Gm18114 12 16155101 to 16155613 512 + pseudogene predicted gene, 18114
Tssr112842 12 16170448 to 16170458 10 + TSS region transcription start site region 112842
Tssr112843 12 16170468 to 16170475 7 + TSS region transcription start site region 112843
Gm48607 12 16185773 to 16206472 20699 + lincRNA gene predicted gene, 48607
Gm36372 12 16204911 to 16221279 16368 - lincRNA gene predicted gene, 36372
Gm48606 12 16207733 to 16286119 78386 + lincRNA gene predicted gene, 48606
Tssr115800 12 16221244 to 16221251 7 - TSS region transcription start site region 115800
Tssr115801 12 16221259 to 16221277 18 - TSS region transcription start site region 115801
Gm48605 12 16229750 to 16232227 2477 - lincRNA gene predicted gene, 48605
Tssr112844 12 16232289 to 16232310 21 + TSS region transcription start site region 112844
D12Lip1 12 16358449 to 16358791 342 DNA segment DNA segment, Chr 12, Lipid Research Laboratory-UCLA 1
D12Lip6 12 16361427 to 16361539 112 DNA segment DNA segment, Chr 12, Lipid Research Laboratory-UCLA 6
D12Mit170 12 16380226 to 16380338 112 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 170
Circp1 12 16380226 to 16380338 112 QTL circadian photosensitivity 1
D12Lip5 12 16492591 to 16492770 179 DNA segment DNA segment, Chr 12, Lipid Research Laboratory-UCLA 5
D12Lip2 12 16503933 to 16504048 115 DNA segment DNA segment, Chr 12, Lipid Research Laboratory-UCLA 2
D12Lip3 12 16503933 to 16504053 120 DNA segment DNA segment, Chr 12, Lipid Research Laboratory-UCLA 3
D12Lip4 12 16503936 to 16504048 112 DNA segment DNA segment, Chr 12, Lipid Research Laboratory-UCLA 4
Tssr112845 12 16532662 to 16532671 9 + TSS region transcription start site region 112845
Tssr3800 12 16532778 to 16532791 13 + TSS region transcription start site region 3800
Lpin1 12 16535669 to 16610966 75297 - protein coding gene lipin 1
Tssr115802 12 16537792 to 16537810 18 - TSS region transcription start site region 115802
Tssr115803 12 16577228 to 16577241 13 - TSS region transcription start site region 115803
Tssr3801 12 16580911 to 16580922 11 - TSS region transcription start site region 3801
Tssr115804 12 16583995 to 16583999 4 - TSS region transcription start site region 115804
Cpgi4438 12 16589381 to 16589885 504 CpG island CpG island 4438
Tssr115805 12 16589723 to 16589735 12 - TSS region transcription start site region 115805
Tssr115806 12 16589743 to 16589826 83 - TSS region transcription start site region 115806
Tssr115807 12 16604131 to 16604143 12 - TSS region transcription start site region 115807
Tssr115808 12 16610960 to 16610991 31 - TSS region transcription start site region 115808
D12Lip7 12 16616565 to 16616746 181 DNA segment DNA segment, Chr 12, Lipid Research Laboratory-UCLA 7
Tssr3802 12 16622370 to 16622373 3 + TSS region transcription start site region 3802
Tssr115809 12 16646957 to 16646975 18 - TSS region transcription start site region 115809
Tssr115810 12 16646991 to 16647002 11 - TSS region transcription start site region 115810
Tssr115811 12 16647007 to 16647019 12 - TSS region transcription start site region 115811
Cpgi4439 12 16653283 to 16654171 888 CpG island CpG island 4439
Ntsr2 12 16653451 to 16660236 6785 + protein coding gene neurotensin receptor 2
Tssr112846 12 16653475 to 16653486 11 + TSS region transcription start site region 112846
Tssr112847 12 16653533 to 16653544 11 + TSS region transcription start site region 112847
Tssr112848 12 16653569 to 16653583 14 + TSS region transcription start site region 112848
Tssr112849 12 16653604 to 16653628 24 + TSS region transcription start site region 112849
Tssr112850 12 16653709 to 16653763 54 + TSS region transcription start site region 112850
Tssr112851 12 16653768 to 16653775 7 + TSS region transcription start site region 112851
Tssr112852 12 16653797 to 16653808 11 + TSS region transcription start site region 112852
Tssr112853 12 16653903 to 16653976 73 + TSS region transcription start site region 112853
Tssr112854 12 16653988 to 16654003 15 + TSS region transcription start site region 112854
Tssr112855 12 16656304 to 16656310 6 + TSS region transcription start site region 112855
Tssr115812 12 16657275 to 16657279 4 - TSS region transcription start site region 115812
Tssr112856 12 16657902 to 16657917 15 + TSS region transcription start site region 112856
Tssr112857 12 16657969 to 16657978 9 + TSS region transcription start site region 112857
Greb1 12 16670615 to 16800886 130271 - protein coding gene gene regulated by estrogen in breast cancer protein
Gm48140 12 16672240 to 16685013 12773 + antisense lncRNA gene predicted gene, 48140
Tssr3803 12 16672275 to 16672303 28 + TSS region transcription start site region 3803
Tssr115813 12 16740203 to 16740257 54 - TSS region transcription start site region 115813
D12Mit269 12 16749234 to 16749351 117 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 269
Tssr115814 12 16753194 to 16753208 14 - TSS region transcription start site region 115814
Tssr115815 12 16753279 to 16753290 11 - TSS region transcription start site region 115815
Tssr115816 12 16753311 to 16753318 7 - TSS region transcription start site region 115816
D12Mit184 12 16757496 to 16757624 128 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 184
Gm44305 12 16767127 to 16767223 96 - miRNA gene predicted gene, 44305
Tssr115817 12 16788666 to 16788678 12 - TSS region transcription start site region 115817
Tssr115818 12 16790208 to 16790210 2 - TSS region transcription start site region 115818
Cpgi4440 12 16800126 to 16801187 1061 CpG island CpG island 4440
Tssr115819 12 16800528 to 16800540 12 - TSS region transcription start site region 115819
Tssr115820 12 16800674 to 16800705 31 - TSS region transcription start site region 115820
Tssr115821 12 16800896 to 16800931 35 - TSS region transcription start site region 115821
Tssr115822 12 16800944 to 16800955 11 - TSS region transcription start site region 115822
Tssr115823 12 16800960 to 16800971 11 - TSS region transcription start site region 115823
Tssr115824 12 16800973 to 16801014 41 - TSS region transcription start site region 115824
Gm48227 12 16801768 to 16802634 866 - lincRNA gene predicted gene, 48227
Cpgi4441 12 16810594 to 16811823 1229 CpG island CpG island 4441
E2f6 12 16810903 to 16826752 15849 + protein coding gene E2F transcription factor 6
Tssr112858 12 16810940 to 16810978 38 + TSS region transcription start site region 112858
Tssr112859 12 16810979 to 16810990 11 + TSS region transcription start site region 112859
Tssr112860 12 16812391 to 16812395 4 + TSS region transcription start site region 112860
Gm36495 12 16844881 to 16850881 6000 - lincRNA gene predicted gene, 36495
Tssr115825 12 16850718 to 16850757 39 - TSS region transcription start site region 115825
Tssr3804 12 16853560 to 16853574 14 + TSS region transcription start site region 3804
Tssr115826 12 16875841 to 16875851 10 - TSS region transcription start site region 115826
Cpgi4442 12 16894068 to 16895741 1673 CpG island CpG island 4442
Tssr115827 12 16894684 to 16894725 41 - TSS region transcription start site region 115827
Tssr112861 12 16894827 to 16894887 60 + TSS region transcription start site region 112861
Tssr112862 12 16894894 to 16894904 10 + TSS region transcription start site region 112862
Rock2 12 16894895 to 16987823 92928 + protein coding gene Rho-associated coiled-coil containing protein kinase 2
Tssr112863 12 16895082 to 16895090 8 + TSS region transcription start site region 112863
Tssr112864 12 16895117 to 16895132 15 + TSS region transcription start site region 112864
Tssr112865 12 16904962 to 16904987 25 + TSS region transcription start site region 112865
Tssr112866 12 16909482 to 16909485 3 + TSS region transcription start site region 112866
Tssr112867 12 16910469 to 16910474 5 + TSS region transcription start site region 112867
Gm48291 12 16921987 to 16922305 318 - pseudogene predicted gene, 48291
Gm22303 12 16939994 to 16940115 121 + snoRNA gene predicted gene, 22303
Tssr112868 12 16942833 to 16942887 54 + TSS region transcription start site region 112868
Tssr112869 12 16958689 to 16958703 14 + TSS region transcription start site region 112869
Tssr112870 12 16965035 to 16965065 30 + TSS region transcription start site region 112870
Tssr112871 12 16965122 to 16965155 33 + TSS region transcription start site region 112871
Tssr112872 12 16965490 to 16965565 75 + TSS region transcription start site region 112872
Tssr112873 12 16966168 to 16966179 11 + TSS region transcription start site region 112873
Pqlc3 12 16988648 to 17000408 11760 - protein coding gene PQ loop repeat containing
Cpgi4443 12 16999636 to 17000513 877 CpG island CpG island 4443
Tssr115828 12 16999964 to 16999977 13 - TSS region transcription start site region 115828
Tssr115829 12 16999991 to 17000071 80 - TSS region transcription start site region 115829
Tssr115830 12 17000108 to 17000122 14 - TSS region transcription start site region 115830
Tssr115831 12 17000330 to 17000354 24 - TSS region transcription start site region 115831
2410004P03Rik 12 17004958 to 17011734 6776 - protein coding gene RIKEN cDNA 2410004P03 gene
Cpgi4444 12 17011424 to 17011754 330 CpG island CpG island 4444
Tssr115832 12 17011512 to 17011561 49 - TSS region transcription start site region 115832
Tssr112874 12 17033708 to 17033715 7 + TSS region transcription start site region 112874
D12Mit58 12 17038020 to 17038137 117 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 58
Gm48538 12 17065413 to 17074550 9137 + lincRNA gene predicted gene, 48538
Kcnf1 12 17172100 to 17176888 4788 - protein coding gene potassium voltage-gated channel, subfamily F, member 1
Cpgi4445 12 17175120 to 17176886 1766 CpG island CpG island 4445
Tssr115833 12 17176544 to 17176557 13 - TSS region transcription start site region 115833
Tssr115834 12 17176574 to 17176587 13 - TSS region transcription start site region 115834
Tssr115835 12 17176954 to 17176965 11 - TSS region transcription start site region 115835
Gm36568 12 17183862 to 17228053 44191 - lncRNA gene predicted gene, 36568
D12Dcr11 12 17218271 to 17218366 95 DNA segment DNA Segment, Chr 12, Derry C. Roopenian 11
Gm10054 12 17233612 to 17234042 430 + pseudogene predicted gene 10054