Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:14935970-16696006

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101 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
4930448C13Rik 12 14996389 to 15050389 54000 - lincRNA gene RIKEN cDNA 4930448C13 gene
Tssr3799 12 15010623 to 15010626 3 + TSS region transcription start site region 3799
Gm27682 12 15020535 to 15020644 109 - miRNA gene predicted gene, 27682
Tssr115784 12 15050395 to 15050407 12 - TSS region transcription start site region 115784
Gm3838 12 15050779 to 15051301 522 + pseudogene predicted gene 3838
Tssr115785 12 15051618 to 15051635 17 - TSS region transcription start site region 115785
Gm36128 12 15051695 to 15096192 44497 + lncRNA gene predicted gene, 36128
Gm19084 12 15102442 to 15104203 1761 + pseudogene predicted gene, 19084
Gm40284 12 15129422 to 15137422 8000 + lncRNA gene predicted gene, 40284
Gm48539 12 15278417 to 15301045 22628 - lincRNA gene predicted gene, 48539
D12Mit169 12 15291025 to 15291141 116 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 169
Cplaq10 12 15291025 to 78993590 63702565 QTL circadian period of locomotor activity 10
Gm48541 12 15483043 to 15486670 3627 + pseudogene predicted gene, 48541
Gm17915 12 15581254 to 15581798 544 + pseudogene predicted gene, 17915
Gm40287 12 15606333 to 15726876 120543 + lncRNA gene predicted gene, 40287
Tssr112836 12 15606335 to 15606353 18 + TSS region transcription start site region 112836
Tssr112837 12 15606367 to 15606390 23 + TSS region transcription start site region 112837
Ath6 12 15708612 to 15708755 143 QTL atherosclerosis 6
D12Mit49 12 15708612 to 15708755 143 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 49
Gm4804 12 15728078 to 15729207 1129 + pseudogene predicted gene 4804
Trib2 12 15791727 to 15816922 25195 - protein coding gene tribbles pseudokinase 2
Tssr115786 12 15793169 to 15793173 4 - TSS region transcription start site region 115786
Cpgi4436 12 15793734 to 15793972 238 CpG island CpG island 4436
Mir6387 12 15800994 to 15801101 107 - miRNA gene microRNA 6387
Tssr112838 12 15811341 to 15811348 7 + TSS region transcription start site region 112838
Tssr115787 12 15814739 to 15814752 13 - TSS region transcription start site region 115787
Cpgi4437 12 15814758 to 15817344 2586 CpG island CpG island 4437
Tssr112839 12 15814913 to 15814920 7 + TSS region transcription start site region 112839
Tssr112840 12 15815017 to 15815027 10 + TSS region transcription start site region 112840
Tssr115788 12 15815572 to 15815583 11 - TSS region transcription start site region 115788
Tssr115789 12 15815596 to 15815613 17 - TSS region transcription start site region 115789
Tssr115790 12 15815970 to 15816006 36 - TSS region transcription start site region 115790
Tssr115791 12 15816011 to 15816020 9 - TSS region transcription start site region 115791
Tssr115792 12 15816030 to 15816059 29 - TSS region transcription start site region 115792
Tssr115793 12 15816138 to 15816149 11 - TSS region transcription start site region 115793
Tssr115794 12 15816171 to 15816190 19 - TSS region transcription start site region 115794
Tssr115795 12 15816595 to 15816607 12 - TSS region transcription start site region 115795
Tssr115796 12 15816736 to 15816747 11 - TSS region transcription start site region 115796
Tssr115797 12 15816762 to 15816881 119 - TSS region transcription start site region 115797
Gm5432 12 15817003 to 15888155 71152 + bidirectional promoter lncRNA gene predicted gene 5432
Gm48558 12 15842758 to 15850625 7867 - lincRNA gene predicted gene, 48558
Tssr115798 12 15850610 to 15850630 20 - TSS region transcription start site region 115798
Gm48557 12 15865144 to 15865697 553 - pseudogene predicted gene, 48557
Tssr115799 12 15865729 to 15865732 3 - TSS region transcription start site region 115799
Gm46335 12 15879786 to 15896823 17037 - lncRNA gene predicted gene, 46335
Tssr112841 12 15929613 to 15929633 20 + TSS region transcription start site region 112841
Gm48584 12 15976264 to 15980488 4224 - lincRNA gene predicted gene, 48584
Gm36235 12 15998768 to 16015526 16758 - lincRNA gene predicted gene, 36235
Gm18114 12 16155101 to 16155613 512 + pseudogene predicted gene, 18114
Tssr112842 12 16170448 to 16170458 10 + TSS region transcription start site region 112842
Tssr112843 12 16170468 to 16170475 7 + TSS region transcription start site region 112843
Gm48607 12 16185773 to 16206472 20699 + lincRNA gene predicted gene, 48607
Gm36372 12 16204911 to 16221279 16368 - lincRNA gene predicted gene, 36372
Gm48606 12 16207733 to 16286119 78386 + lincRNA gene predicted gene, 48606
Tssr115800 12 16221244 to 16221251 7 - TSS region transcription start site region 115800
Tssr115801 12 16221259 to 16221277 18 - TSS region transcription start site region 115801
Gm48605 12 16229750 to 16232227 2477 - lincRNA gene predicted gene, 48605
Tssr112844 12 16232289 to 16232310 21 + TSS region transcription start site region 112844
D12Lip1 12 16358449 to 16358791 342 DNA segment DNA segment, Chr 12, Lipid Research Laboratory-UCLA 1
D12Lip6 12 16361427 to 16361539 112 DNA segment DNA segment, Chr 12, Lipid Research Laboratory-UCLA 6
Circp1 12 16380226 to 16380338 112 QTL circadian photosensitivity 1
D12Mit170 12 16380226 to 16380338 112 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 170
D12Lip5 12 16492591 to 16492770 179 DNA segment DNA segment, Chr 12, Lipid Research Laboratory-UCLA 5
D12Lip2 12 16503933 to 16504048 115 DNA segment DNA segment, Chr 12, Lipid Research Laboratory-UCLA 2
D12Lip3 12 16503933 to 16504053 120 DNA segment DNA segment, Chr 12, Lipid Research Laboratory-UCLA 3
D12Lip4 12 16503936 to 16504048 112 DNA segment DNA segment, Chr 12, Lipid Research Laboratory-UCLA 4
Tssr112845 12 16532662 to 16532671 9 + TSS region transcription start site region 112845
Tssr3800 12 16532778 to 16532791 13 + TSS region transcription start site region 3800
Lpin1 12 16535669 to 16610966 75297 - protein coding gene lipin 1
Tssr115802 12 16537792 to 16537810 18 - TSS region transcription start site region 115802
Tssr115803 12 16577228 to 16577241 13 - TSS region transcription start site region 115803
Tssr3801 12 16580911 to 16580922 11 - TSS region transcription start site region 3801
Tssr115804 12 16583995 to 16583999 4 - TSS region transcription start site region 115804
Cpgi4438 12 16589381 to 16589885 504 CpG island CpG island 4438
Tssr115805 12 16589723 to 16589735 12 - TSS region transcription start site region 115805
Tssr115806 12 16589743 to 16589826 83 - TSS region transcription start site region 115806
Tssr115807 12 16604131 to 16604143 12 - TSS region transcription start site region 115807
Tssr115808 12 16610960 to 16610991 31 - TSS region transcription start site region 115808
D12Lip7 12 16616565 to 16616746 181 DNA segment DNA segment, Chr 12, Lipid Research Laboratory-UCLA 7
Tssr3802 12 16622370 to 16622373 3 + TSS region transcription start site region 3802
Tssr115809 12 16646957 to 16646975 18 - TSS region transcription start site region 115809
Tssr115810 12 16646991 to 16647002 11 - TSS region transcription start site region 115810
Tssr115811 12 16647007 to 16647019 12 - TSS region transcription start site region 115811
Cpgi4439 12 16653283 to 16654171 888 CpG island CpG island 4439
Ntsr2 12 16653451 to 16660236 6785 + protein coding gene neurotensin receptor 2
Tssr112846 12 16653475 to 16653486 11 + TSS region transcription start site region 112846
Tssr112847 12 16653533 to 16653544 11 + TSS region transcription start site region 112847
Tssr112848 12 16653569 to 16653583 14 + TSS region transcription start site region 112848
Tssr112849 12 16653604 to 16653628 24 + TSS region transcription start site region 112849
Tssr112850 12 16653709 to 16653763 54 + TSS region transcription start site region 112850
Tssr112851 12 16653768 to 16653775 7 + TSS region transcription start site region 112851
Tssr112852 12 16653797 to 16653808 11 + TSS region transcription start site region 112852
Tssr112853 12 16653903 to 16653976 73 + TSS region transcription start site region 112853
Tssr112854 12 16653988 to 16654003 15 + TSS region transcription start site region 112854
Tssr112855 12 16656304 to 16656310 6 + TSS region transcription start site region 112855
Tssr115812 12 16657275 to 16657279 4 - TSS region transcription start site region 115812
Tssr112856 12 16657902 to 16657917 15 + TSS region transcription start site region 112856
Tssr112857 12 16657969 to 16657978 9 + TSS region transcription start site region 112857
Greb1 12 16670615 to 16800886 130271 - protein coding gene gene regulated by estrogen in breast cancer protein
Gm48140 12 16672240 to 16685013 12773 + antisense lncRNA gene predicted gene, 48140
Tssr3803 12 16672275 to 16672303 28 + TSS region transcription start site region 3803