Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:12999133-13853811

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48 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm48209 12 13046728 to 13054729 8001 - lincRNA gene predicted gene, 48209
Gm35350 12 13100316 to 13102048 1732 - lncRNA gene predicted gene, 35350
Tssr112822 12 13102655 to 13102674 19 + TSS region transcription start site region 112822
Gm35298 12 13102845 to 13115903 13058 + lincRNA gene predicted gene, 35298
Gm48213 12 13125776 to 13127192 1416 + lincRNA gene predicted gene, 48213
Gm38686 12 13146810 to 13152196 5386 - lncRNA gene predicted gene, 38686
Rpl21-ps2 12 13149680 to 13150160 480 - pseudogene ribosomal protein L21, pseudogene 2
Gm24208 12 13163629 to 13163763 134 - snoRNA gene predicted gene, 24208
Ddx1 12 13219307 to 13249174 29867 - protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 1
Cpgi4430 12 13248687 to 13249470 783 CpG island CpG island 4430
Tssr115777 12 13249138 to 13249191 53 - TSS region transcription start site region 115777
Tssr115778 12 13249198 to 13249224 26 - TSS region transcription start site region 115778
Cpgi4431 12 13268995 to 13269593 598 CpG island CpG island 4431
Tssr112823 12 13269111 to 13269154 43 + TSS region transcription start site region 112823
Nbas 12 13269133 to 13583811 314678 + protein coding gene neuroblastoma amplified sequence
Tssr112824 12 13303250 to 13303262 12 + TSS region transcription start site region 112824
Tssr112825 12 13303273 to 13303286 13 + TSS region transcription start site region 112825
Pifs1 12 13383077 to 13383077 0 QTL peptide-induced fatal syndrome 1
Tssr112826 12 13412769 to 13412785 16 + TSS region transcription start site region 112826
Gm48309 12 13423260 to 13425717 2457 - unclassified gene predicted gene, 48309
Gm35638 12 13436447 to 13437098 651 - pseudogene predicted gene, 35638
Cpgi4432 12 13437049 to 13437271 222 CpG island CpG island 4432
Tssr112827 12 13438804 to 13438808 4 + TSS region transcription start site region 112827
Gm6736 12 13455023 to 13455970 947 - pseudogene predicted gene 6736
Tssr115779 12 13456005 to 13456010 5 - TSS region transcription start site region 115779
Gm48311 12 13484808 to 13487047 2239 - antisense lncRNA gene predicted gene, 48311
Tssr112828 12 13487112 to 13487139 27 + TSS region transcription start site region 112828
Gm24142 12 13490509 to 13490615 106 - snRNA gene predicted gene, 24142
Tssr112829 12 13501209 to 13501213 4 + TSS region transcription start site region 112829
Tssr3795 12 13501224 to 13501229 5 + TSS region transcription start site region 3795
Tssr3796 12 13501232 to 13501237 5 + TSS region transcription start site region 3796
Tssr112830 12 13501240 to 13501249 9 + TSS region transcription start site region 112830
Gm22170 12 13507862 to 13507968 106 - snRNA gene predicted gene, 22170
Tssr3797 12 13536466 to 13536490 24 + TSS region transcription start site region 3797
Tssr112831 12 13559175 to 13559182 7 + TSS region transcription start site region 112831
Tssr112832 12 13564132 to 13564136 4 + TSS region transcription start site region 112832
Tssr3798 12 13566127 to 13566152 25 + TSS region transcription start site region 3798
Tssr112833 12 13566155 to 13566168 13 + TSS region transcription start site region 112833
Tssr112834 12 13594240 to 13594244 4 + TSS region transcription start site region 112834
Gm35725 12 13607789 to 13627646 19857 - lincRNA gene predicted gene, 35725
D12Mit216 12 13645140 to 13645248 108 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 216
Gm35890 12 13668853 to 13676084 7231 + lincRNA gene predicted gene, 35890
Gm4929 12 13752674 to 13753665 991 - pseudogene predicted gene 4929
Gm38668 12 13785160 to 13788542 3382 - pseudogene predicted gene, 38668
Gm49374 12 13787903 to 13792337 4434 - pseudogene predicted gene, 49374
Gm7126 12 13788557 to 13790252 1695 - pseudogene predicted gene 7126
Gm9194 12 13790264 to 13791710 1446 - pseudogene predicted gene 9194
D12Mit241 12 13810804 to 13810921 117 DNA segment DNA Segment, Chr 12, Massachusetts Institute of Technology 241