Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:12979198-13519224

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38 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm35208 12 12987317 to 12994199 6882 + lincRNA gene predicted gene, 35208
Tssr112820 12 12993207 to 12993214 7 + TSS region transcription start site region 112820
Tssr112821 12 12993308 to 12993341 33 + TSS region transcription start site region 112821
D12Mit209 12 12996775 to 12996875 100 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 209
5730510P18Rik 12 12997181 to 12998032 851 unclassified non-coding RNA gene RIKEN cDNA 5730510P18 gene
Gm48209 12 13046728 to 13054729 8001 - lincRNA gene predicted gene, 48209
Gm35350 12 13100316 to 13102048 1732 - lncRNA gene predicted gene, 35350
Tssr112822 12 13102655 to 13102674 19 + TSS region transcription start site region 112822
Gm35298 12 13102845 to 13115903 13058 + lincRNA gene predicted gene, 35298
Gm48213 12 13125776 to 13127192 1416 + lincRNA gene predicted gene, 48213
Gm38686 12 13146810 to 13152196 5386 - lncRNA gene predicted gene, 38686
Rpl21-ps2 12 13149680 to 13150160 480 - pseudogene ribosomal protein L21, pseudogene 2
Gm24208 12 13163629 to 13163763 134 - snoRNA gene predicted gene, 24208
Ddx1 12 13219307 to 13249174 29867 - protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 1
Cpgi4430 12 13248687 to 13249470 783 CpG island CpG island 4430
Tssr115777 12 13249138 to 13249191 53 - TSS region transcription start site region 115777
Tssr115778 12 13249198 to 13249224 26 - TSS region transcription start site region 115778
Cpgi4431 12 13268995 to 13269593 598 CpG island CpG island 4431
Tssr112823 12 13269111 to 13269154 43 + TSS region transcription start site region 112823
Nbas 12 13269133 to 13583811 314678 + protein coding gene neuroblastoma amplified sequence
Tssr112824 12 13303250 to 13303262 12 + TSS region transcription start site region 112824
Tssr112825 12 13303273 to 13303286 13 + TSS region transcription start site region 112825
Pifs1 12 13383077 to 13383077 0 QTL peptide-induced fatal syndrome 1
Tssr112826 12 13412769 to 13412785 16 + TSS region transcription start site region 112826
Gm48309 12 13423260 to 13425717 2457 - unclassified gene predicted gene, 48309
Gm35638 12 13436447 to 13437098 651 - pseudogene predicted gene, 35638
Cpgi4432 12 13437049 to 13437271 222 CpG island CpG island 4432
Tssr112827 12 13438804 to 13438808 4 + TSS region transcription start site region 112827
Gm6736 12 13455023 to 13455970 947 - pseudogene predicted gene 6736
Tssr115779 12 13456005 to 13456010 5 - TSS region transcription start site region 115779
Gm48311 12 13484808 to 13487047 2239 - antisense lncRNA gene predicted gene, 48311
Tssr112828 12 13487112 to 13487139 27 + TSS region transcription start site region 112828
Gm24142 12 13490509 to 13490615 106 - snRNA gene predicted gene, 24142
Tssr112829 12 13501209 to 13501213 4 + TSS region transcription start site region 112829
Tssr3795 12 13501224 to 13501229 5 + TSS region transcription start site region 3795
Tssr3796 12 13501232 to 13501237 5 + TSS region transcription start site region 3796
Tssr112830 12 13501240 to 13501249 9 + TSS region transcription start site region 112830
Gm22170 12 13507862 to 13507968 106 - snRNA gene predicted gene, 22170