Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:12833250-13773262

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77 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr115762 12 12850714 to 12850723 9 - TSS region transcription start site region 115762
Gm48187 12 12865570 to 12874689 9119 + lincRNA gene predicted gene, 48187
4930519A11Rik 12 12902720 to 12907378 4658 + lincRNA gene RIKEN cDNA 4930519A11 gene
Cpgi4425 12 12904491 to 12905032 541 CpG island CpG island 4425
Tssr112817 12 12909397 to 12909409 12 + TSS region transcription start site region 112817
Tssr112818 12 12909412 to 12909431 19 + TSS region transcription start site region 112818
Gm40271 12 12909428 to 12913029 3601 + lincRNA gene predicted gene, 40271
Rpl36-ps3 12 12912022 to 12912336 314 + pseudogene ribosomal protein L36, pseudogene 3
Mycn 12 12936093 to 12941836 5743 - protein coding gene v-myc avian myelocytomatosis viral related oncogene, neuroblastoma derived
Tssr115763 12 12936944 to 12936948 4 - TSS region transcription start site region 115763
Cpgi4426 12 12937030 to 12937650 620 CpG island CpG island 4426
Tssr115764 12 12937270 to 12937281 11 - TSS region transcription start site region 115764
Tssr115765 12 12937981 to 12937989 8 - TSS region transcription start site region 115765
Tssr115766 12 12938252 to 12938255 3 - TSS region transcription start site region 115766
Tssr115767 12 12938442 to 12938458 16 - TSS region transcription start site region 115767
Tssr115768 12 12938740 to 12938752 12 - TSS region transcription start site region 115768
Cpgi4427 12 12939553 to 12940478 925 CpG island CpG island 4427
Tssr115769 12 12939645 to 12939658 13 - TSS region transcription start site region 115769
Tssr115770 12 12939861 to 12939878 17 - TSS region transcription start site region 115770
Tssr115771 12 12940376 to 12940388 12 - TSS region transcription start site region 115771
Tssr115772 12 12940393 to 12940407 14 - TSS region transcription start site region 115772
Tssr115773 12 12940600 to 12940612 12 - TSS region transcription start site region 115773
Cpgi4428 12 12940889 to 12941967 1078 CpG island CpG island 4428
Tssr115774 12 12941441 to 12941443 2 - TSS region transcription start site region 115774
Tssr115775 12 12941827 to 12941845 18 - TSS region transcription start site region 115775
Cpgi4429 12 12942159 to 12943017 858 CpG island CpG island 4429
Tssr112819 12 12942561 to 12942574 13 + TSS region transcription start site region 112819
Tssr115776 12 12943100 to 12943112 12 - TSS region transcription start site region 115776
Gm48201 12 12949289 to 12949535 246 - pseudogene predicted gene, 48201
Gm35208 12 12987317 to 12994199 6882 + lincRNA gene predicted gene, 35208
Tssr112820 12 12993207 to 12993214 7 + TSS region transcription start site region 112820
Tssr112821 12 12993308 to 12993341 33 + TSS region transcription start site region 112821
D12Mit209 12 12996775 to 12996875 100 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 209
5730510P18Rik 12 12997181 to 12998032 851 unclassified non-coding RNA gene RIKEN cDNA 5730510P18 gene
Gm48209 12 13046728 to 13054729 8001 - lincRNA gene predicted gene, 48209
Gm35350 12 13100316 to 13102048 1732 - lncRNA gene predicted gene, 35350
Tssr112822 12 13102655 to 13102674 19 + TSS region transcription start site region 112822
Gm35298 12 13102845 to 13115903 13058 + lincRNA gene predicted gene, 35298
Gm48213 12 13125776 to 13127192 1416 + lincRNA gene predicted gene, 48213
Gm38686 12 13146810 to 13152196 5386 - lncRNA gene predicted gene, 38686
Rpl21-ps2 12 13149680 to 13150160 480 - pseudogene ribosomal protein L21, pseudogene 2
Gm24208 12 13163629 to 13163763 134 - snoRNA gene predicted gene, 24208
Ddx1 12 13219307 to 13249174 29867 - protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 1
Cpgi4430 12 13248687 to 13249470 783 CpG island CpG island 4430
Tssr115777 12 13249138 to 13249191 53 - TSS region transcription start site region 115777
Tssr115778 12 13249198 to 13249224 26 - TSS region transcription start site region 115778
Cpgi4431 12 13268995 to 13269593 598 CpG island CpG island 4431
Tssr112823 12 13269111 to 13269154 43 + TSS region transcription start site region 112823
Nbas 12 13269133 to 13583811 314678 + protein coding gene neuroblastoma amplified sequence
Tssr112824 12 13303250 to 13303262 12 + TSS region transcription start site region 112824
Tssr112825 12 13303273 to 13303286 13 + TSS region transcription start site region 112825
Pifs1 12 13383077 to 13383077 0 QTL peptide-induced fatal syndrome 1
Tssr112826 12 13412769 to 13412785 16 + TSS region transcription start site region 112826
Gm48309 12 13423260 to 13425717 2457 - unclassified gene predicted gene, 48309
Gm35638 12 13436447 to 13437098 651 - pseudogene predicted gene, 35638
Cpgi4432 12 13437049 to 13437271 222 CpG island CpG island 4432
Tssr112827 12 13438804 to 13438808 4 + TSS region transcription start site region 112827
Gm6736 12 13455023 to 13455970 947 - pseudogene predicted gene 6736
Tssr115779 12 13456005 to 13456010 5 - TSS region transcription start site region 115779
Gm48311 12 13484808 to 13487047 2239 - antisense lncRNA gene predicted gene, 48311
Tssr112828 12 13487112 to 13487139 27 + TSS region transcription start site region 112828
Gm24142 12 13490509 to 13490615 106 - snRNA gene predicted gene, 24142
Tssr112829 12 13501209 to 13501213 4 + TSS region transcription start site region 112829
Tssr3795 12 13501224 to 13501229 5 + TSS region transcription start site region 3795
Tssr3796 12 13501232 to 13501237 5 + TSS region transcription start site region 3796
Tssr112830 12 13501240 to 13501249 9 + TSS region transcription start site region 112830
Gm22170 12 13507862 to 13507968 106 - snRNA gene predicted gene, 22170
Tssr3797 12 13536466 to 13536490 24 + TSS region transcription start site region 3797
Tssr112831 12 13559175 to 13559182 7 + TSS region transcription start site region 112831
Tssr112832 12 13564132 to 13564136 4 + TSS region transcription start site region 112832
Tssr3798 12 13566127 to 13566152 25 + TSS region transcription start site region 3798
Tssr112833 12 13566155 to 13566168 13 + TSS region transcription start site region 112833
Tssr112834 12 13594240 to 13594244 4 + TSS region transcription start site region 112834
Gm35725 12 13607789 to 13627646 19857 - lincRNA gene predicted gene, 35725
D12Mit216 12 13645140 to 13645248 108 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 216
Gm35890 12 13668853 to 13676084 7231 + lincRNA gene predicted gene, 35890
Gm4929 12 13752674 to 13753665 991 - pseudogene predicted gene 4929