Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:12325917-12835951

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34 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Fam49a 12 12262133 to 12376363 114230 + protein coding gene family with sequence similarity 49, member A
Tssr112809 12 12342174 to 12342178 4 + TSS region transcription start site region 112809
Tssr112810 12 12345312 to 12345320 8 + TSS region transcription start site region 112810
4921511I17Rik 12 12351522 to 12392475 40953 - antisense lncRNA gene RIKEN cDNA 4921511I17 gene
Cpgi4424 12 12420933 to 12421312 379 CpG island CpG island 4424
Gm34489 12 12421041 to 12524489 103448 + lncRNA gene predicted gene, 34489
Tssr115751 12 12491873 to 12491878 5 - TSS region transcription start site region 115751
Tssr115752 12 12492013 to 12492022 9 - TSS region transcription start site region 115752
Tssr115753 12 12492253 to 12492260 7 - TSS region transcription start site region 115753
Tssr115754 12 12492762 to 12492772 10 - TSS region transcription start site region 115754
Tssr115755 12 12492843 to 12492881 38 - TSS region transcription start site region 115755
Tssr115756 12 12492906 to 12492913 7 - TSS region transcription start site region 115756
Tssr115757 12 12493102 to 12493117 15 - TSS region transcription start site region 115757
Tssr115758 12 12493119 to 12493128 9 - TSS region transcription start site region 115758
Tssr115759 12 12546624 to 12546635 11 - TSS region transcription start site region 115759
Tssr112811 12 12547912 to 12547944 32 + TSS region transcription start site region 112811
Tssr112812 12 12580917 to 12580951 34 + TSS region transcription start site region 112812
Gm34637 12 12667732 to 12669917 2185 - lncRNA gene predicted gene, 34637
Gm27952 12 12682514 to 12682618 104 - rRNA gene predicted gene, 27952
Gm34696 12 12688361 to 12704861 16500 - lncRNA gene predicted gene, 34696
Gm25538 12 12700039 to 12700145 106 + snRNA gene predicted gene, 25538
Gm40269 12 12708261 to 12711956 3695 - lncRNA gene predicted gene, 40269
Gm40270 12 12722319 to 12725258 2939 - lncRNA gene predicted gene, 40270
3732407C23Rik 12 12722861 to 12726400 3539 + unclassified gene RIKEN cDNA 3732407C23 gene
D12Ertd208e 12 12735085 to 12735328 243 DNA segment DNA segment, Chr 12, ERATO Doi 208, expressed
Gm35104 12 12765994 to 12774296 8302 + lncRNA gene predicted gene, 35104
Tssr112813 12 12766009 to 12766020 11 + TSS region transcription start site region 112813
Tssr112814 12 12766028 to 12766031 3 + TSS region transcription start site region 112814
Tssr112815 12 12784669 to 12784680 11 + TSS region transcription start site region 112815
Platr19 12 12787985 to 12794285 6300 + lincRNA gene pluripotency associated transcript 19
Tssr115760 12 12788667 to 12788681 14 - TSS region transcription start site region 115760
Tssr115761 12 12788694 to 12788704 10 - TSS region transcription start site region 115761
Gm35155 12 12810723 to 12829248 18525 + lncRNA gene predicted gene, 35155
Tssr112816 12 12828035 to 12828069 34 + TSS region transcription start site region 112816