Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:12062133-12576363

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29 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm18240 12 12097732 to 12123271 25539 - pseudogene predicted gene, 18240
Gm26171 12 12106737 to 12106867 130 + rRNA gene predicted gene, 26171
Gm34348 12 12145208 to 12147695 2487 - lncRNA gene predicted gene, 34348
Tssr3794 12 12170538 to 12170540 2 - TSS region transcription start site region 3794
Tssr115750 12 12177311 to 12177331 20 - TSS region transcription start site region 115750
Gm40838 12 12237189 to 12254299 17110 + lncRNA gene predicted gene, 40838
Cpgi4422 12 12261806 to 12262771 965 CpG island CpG island 4422
Fam49a 12 12262133 to 12376363 114230 + protein coding gene family with sequence similarity 49, member A
Tssr112807 12 12262139 to 12262157 18 + TSS region transcription start site region 112807
Tssr112808 12 12262164 to 12262191 27 + TSS region transcription start site region 112808
Gm34407 12 12284555 to 12289464 4909 - lncRNA gene predicted gene, 34407
9530022J15Rik 12 12293444 to 12294051 607 unclassified gene RIKEN cDNA 9530022J15 gene
D12Mit56 12 12302608 to 12302754 146 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 56
Cpgi4423 12 12324380 to 12324714 334 CpG island CpG island 4423
Tssr112809 12 12342174 to 12342178 4 + TSS region transcription start site region 112809
Tssr112810 12 12345312 to 12345320 8 + TSS region transcription start site region 112810
4921511I17Rik 12 12351522 to 12392475 40953 - antisense lncRNA gene RIKEN cDNA 4921511I17 gene
Cpgi4424 12 12420933 to 12421312 379 CpG island CpG island 4424
Gm34489 12 12421041 to 12524489 103448 + lncRNA gene predicted gene, 34489
Tssr115751 12 12491873 to 12491878 5 - TSS region transcription start site region 115751
Tssr115752 12 12492013 to 12492022 9 - TSS region transcription start site region 115752
Tssr115753 12 12492253 to 12492260 7 - TSS region transcription start site region 115753
Tssr115754 12 12492762 to 12492772 10 - TSS region transcription start site region 115754
Tssr115755 12 12492843 to 12492881 38 - TSS region transcription start site region 115755
Tssr115756 12 12492906 to 12492913 7 - TSS region transcription start site region 115756
Tssr115757 12 12493102 to 12493117 15 - TSS region transcription start site region 115757
Tssr115758 12 12493119 to 12493128 9 - TSS region transcription start site region 115758
Tssr115759 12 12546624 to 12546635 11 - TSS region transcription start site region 115759
Tssr112811 12 12547912 to 12547944 32 + TSS region transcription start site region 112811