Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:118126702-119199004

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64 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Igan4 12 109783591 to 119061214 9277623 QTL IgA nephropathy 4
Dnah11 12 117877982 to 118199043 321061 - protein coding gene dynein, axonemal, heavy chain 11
Cpgi5230 12 118198432 to 118199076 644 CpG island CpG island 5230
Tssr118142 12 118198917 to 118198951 34 - TSS region transcription start site region 118142
Gm49602 12 118231595 to 118234564 2969 - lincRNA gene predicted gene, 49602
Sp4 12 118234933 to 118301440 66507 - protein coding gene trans-acting transcription factor 4
Tssr115558 12 118239563 to 118239566 3 + TSS region transcription start site region 115558
Cpgi5231 12 118301092 to 118302771 1679 CpG island CpG island 5231
Tssr118143 12 118301259 to 118301289 30 - TSS region transcription start site region 118143
Tssr118144 12 118301370 to 118301426 56 - TSS region transcription start site region 118144
Tssr118145 12 118301429 to 118301458 29 - TSS region transcription start site region 118145
Tssr115559 12 118301620 to 118301648 28 + TSS region transcription start site region 115559
Tssr118146 12 118301922 to 118301942 20 - TSS region transcription start site region 118146
Tssr118147 12 118301952 to 118301971 19 - TSS region transcription start site region 118147
Tssr115560 12 118316588 to 118316589 1 + TSS region transcription start site region 115560
Tssr115561 12 118376762 to 118376765 3 + TSS region transcription start site region 115561
Gm25577 12 118504928 to 118505034 106 - snRNA gene predicted gene, 25577
D230030E09Rik 12 118518297 to 118530193 11896 - lincRNA gene Riken cDNA D230030E09 gene
Tssr115562 12 118602648 to 118602656 8 + TSS region transcription start site region 115562
Gm9267 12 118602677 to 118603079 402 + pseudogene predicted gene 9267
Tssr118148 12 118657859 to 118657878 19 - TSS region transcription start site region 118148
Gm31626 12 118661702 to 118664004 2302 + lncRNA gene predicted gene, 31626
Gm18441 12 118732439 to 118733055 616 - pseudogene predicted gene, 18441
Gm22537 12 118753554 to 118753752 198 + unclassified non-coding RNA gene predicted gene, 22537
Gm29689 12 118757495 to 118758083 588 - pseudogene predicted gene, 29689
Gm6171 12 118793188 to 118793832 644 - pseudogene predicted gene 6171
Cpgi5232 12 118836242 to 118837379 1137 CpG island CpG island 5232
Cpgi5233 12 118842940 to 118843607 667 CpG island CpG island 5233
Sp8 12 118846329 to 118852576 6247 + protein coding gene trans-acting transcription factor 8
Cpgi5234 12 118846591 to 118847278 687 CpG island CpG island 5234
Tssr115563 12 118847206 to 118847217 11 + TSS region transcription start site region 115563
Tssr115564 12 118847227 to 118847238 11 + TSS region transcription start site region 115564
Tssr115565 12 118847305 to 118847311 6 + TSS region transcription start site region 115565
Tssr115566 12 118847548 to 118847568 20 + TSS region transcription start site region 115566
Tssr115567 12 118847572 to 118847584 12 + TSS region transcription start site region 115567
Cpgi5235 12 118848124 to 118850189 2065 CpG island CpG island 5235
Tssr115568 12 118848388 to 118848412 24 + TSS region transcription start site region 115568
Tssr115569 12 118851239 to 118851241 2 + TSS region transcription start site region 115569
Cpgi5236 12 118855055 to 118855455 400 CpG island CpG island 5236
Abcb5 12 118867824 to 118966421 98597 - protein coding gene ATP-binding cassette, sub-family B (MDR/TAP), member 5
Tssr118149 12 118908923 to 118908926 3 - TSS region transcription start site region 118149
Tssr118150 12 118924576 to 118924582 6 - TSS region transcription start site region 118150
Tssr118151 12 118966390 to 118966393 3 - TSS region transcription start site region 118151
Tssr118152 12 118966395 to 118966411 16 - TSS region transcription start site region 118152
Tssr115570 12 119030791 to 119030803 12 + TSS region transcription start site region 115570
Nils1 12 119060930 to 119061214 284 QTL neointima lesion size 1
D12Mit144 12 119060930 to 119061214 284 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 144
Gm18921 12 119067065 to 119067430 365 - pseudogene predicted gene, 18921
Tssr118153 12 119070528 to 119070548 20 - TSS region transcription start site region 118153
Tssr118154 12 119101542 to 119101551 9 - TSS region transcription start site region 118154
Tssr118155 12 119107773 to 119107779 6 - TSS region transcription start site region 118155
Tssr115571 12 119136014 to 119136018 4 + TSS region transcription start site region 115571
Tssr118156 12 119159868 to 119159878 10 - TSS region transcription start site region 118156
Tssr118157 12 119160356 to 119160359 3 - TSS region transcription start site region 118157
Tssr118158 12 119160577 to 119160589 12 - TSS region transcription start site region 118158
Tssr118159 12 119160794 to 119160804 10 - TSS region transcription start site region 118159
Tssr118160 12 119160840 to 119160854 14 - TSS region transcription start site region 118160
Tssr118161 12 119160913 to 119160921 8 - TSS region transcription start site region 118161
Itgb8 12 119162803 to 119238276 75473 - protein coding gene integrin beta 8
Tssr118162 12 119182093 to 119182105 12 - TSS region transcription start site region 118162
Tssr118163 12 119182135 to 119182144 9 - TSS region transcription start site region 118163
Tssr118164 12 119182288 to 119182309 21 - TSS region transcription start site region 118164
Tssr118165 12 119197215 to 119197254 39 - TSS region transcription start site region 118165
Tssr118166 12 119197700 to 119197706 6 - TSS region transcription start site region 118166