Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:117906762-118846765

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31 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dnah11 12 117877982 to 118199043 321061 - protein coding gene dynein, axonemal, heavy chain 11
Tssr115556 12 117916097 to 117916106 9 + TSS region transcription start site region 115556
Tssr115557 12 117917836 to 117917846 10 + TSS region transcription start site region 115557
Cpgi5230 12 118198432 to 118199076 644 CpG island CpG island 5230
Tssr118142 12 118198917 to 118198951 34 - TSS region transcription start site region 118142
Gm49602 12 118231595 to 118234564 2969 - lincRNA gene predicted gene, 49602
Sp4 12 118234933 to 118301440 66507 - protein coding gene trans-acting transcription factor 4
Tssr115558 12 118239563 to 118239566 3 + TSS region transcription start site region 115558
Cpgi5231 12 118301092 to 118302771 1679 CpG island CpG island 5231
Tssr118143 12 118301259 to 118301289 30 - TSS region transcription start site region 118143
Tssr118144 12 118301370 to 118301426 56 - TSS region transcription start site region 118144
Tssr118145 12 118301429 to 118301458 29 - TSS region transcription start site region 118145
Tssr115559 12 118301620 to 118301648 28 + TSS region transcription start site region 115559
Tssr118146 12 118301922 to 118301942 20 - TSS region transcription start site region 118146
Tssr118147 12 118301952 to 118301971 19 - TSS region transcription start site region 118147
Tssr115560 12 118316588 to 118316589 1 + TSS region transcription start site region 115560
Tssr115561 12 118376762 to 118376765 3 + TSS region transcription start site region 115561
Gm25577 12 118504928 to 118505034 106 - snRNA gene predicted gene, 25577
D230030E09Rik 12 118518297 to 118530193 11896 - lincRNA gene Riken cDNA D230030E09 gene
Tssr115562 12 118602648 to 118602656 8 + TSS region transcription start site region 115562
Gm9267 12 118602677 to 118603079 402 + pseudogene predicted gene 9267
Tssr118148 12 118657859 to 118657878 19 - TSS region transcription start site region 118148
Gm31626 12 118661702 to 118664004 2302 + lncRNA gene predicted gene, 31626
Gm18441 12 118732439 to 118733055 616 - pseudogene predicted gene, 18441
Gm22537 12 118753554 to 118753752 198 + unclassified non-coding RNA gene predicted gene, 22537
Gm29689 12 118757495 to 118758083 588 - pseudogene predicted gene, 29689
Gm6171 12 118793188 to 118793832 644 - pseudogene predicted gene 6171
Cpgi5232 12 118836242 to 118837379 1137 CpG island CpG island 5232
Cpgi5233 12 118842940 to 118843607 667 CpG island CpG island 5233
Sp8 12 118846329 to 118852576 6247 + protein coding gene trans-acting transcription factor 8
Cpgi5234 12 118846591 to 118847278 687 CpG island CpG island 5234