Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:117553917-118843951

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55 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rapgef5 12 117516479 to 117759737 243258 + protein coding gene Rap guanine nucleotide exchange factor (GEF) 5
Gm24741 12 117574342 to 117574447 105 + rRNA gene predicted gene, 24741
A930023M06Rik 12 117602039 to 117603763 1724 + sense intronic lncRNA gene RIKEN cDNA A930023M06 gene
Tssr115540 12 117625078 to 117625085 7 + TSS region transcription start site region 115540
Tssr115541 12 117626357 to 117626385 28 + TSS region transcription start site region 115541
D830016K09Rik 12 117630013 to 117633779 3766 unclassified gene RIKEN cDNA D830016K09 gene
Tssr115542 12 117658023 to 117658045 22 + TSS region transcription start site region 115542
Tssr115543 12 117658050 to 117658064 14 + TSS region transcription start site region 115543
Tssr115544 12 117658076 to 117658087 11 + TSS region transcription start site region 115544
Cpgi5228 12 117688578 to 117689180 602 CpG island CpG island 5228
Tssr115545 12 117688717 to 117688727 10 + TSS region transcription start site region 115545
Tssr115546 12 117688746 to 117688764 18 + TSS region transcription start site region 115546
Tssr115547 12 117688792 to 117688876 84 + TSS region transcription start site region 115547
Gm18955 12 117723974 to 117724568 594 + pseudogene predicted gene, 18955
Tssr115548 12 117742761 to 117742771 10 + TSS region transcription start site region 115548
Tssr115549 12 117763511 to 117763526 15 + TSS region transcription start site region 115549
Tssr115550 12 117830881 to 117830883 2 + TSS region transcription start site region 115550
Gm20613 12 117834007 to 117834351 344 - pseudogene predicted gene 20613
Cpgi5229 12 117843255 to 117844277 1022 CpG island CpG island 5229
Tssr3984 12 117843440 to 117843474 34 + TSS region transcription start site region 3984
Cdca7l 12 117843473 to 117878712 35239 + protein coding gene cell division cycle associated 7 like
Tssr115551 12 117843489 to 117843507 18 + TSS region transcription start site region 115551
Tssr115552 12 117843694 to 117843740 46 + TSS region transcription start site region 115552
Tssr115553 12 117843846 to 117843871 25 + TSS region transcription start site region 115553
Tssr115554 12 117843873 to 117843923 50 + TSS region transcription start site region 115554
Tssr115555 12 117864909 to 117864937 28 + TSS region transcription start site region 115555
Dnah11 12 117877982 to 118199043 321061 - protein coding gene dynein, axonemal, heavy chain 11
Tssr115556 12 117916097 to 117916106 9 + TSS region transcription start site region 115556
Tssr115557 12 117917836 to 117917846 10 + TSS region transcription start site region 115557
Cpgi5230 12 118198432 to 118199076 644 CpG island CpG island 5230
Tssr118142 12 118198917 to 118198951 34 - TSS region transcription start site region 118142
Gm49602 12 118231595 to 118234564 2969 - lincRNA gene predicted gene, 49602
Sp4 12 118234933 to 118301440 66507 - protein coding gene trans-acting transcription factor 4
Tssr115558 12 118239563 to 118239566 3 + TSS region transcription start site region 115558
Cpgi5231 12 118301092 to 118302771 1679 CpG island CpG island 5231
Tssr118143 12 118301259 to 118301289 30 - TSS region transcription start site region 118143
Tssr118144 12 118301370 to 118301426 56 - TSS region transcription start site region 118144
Tssr118145 12 118301429 to 118301458 29 - TSS region transcription start site region 118145
Tssr115559 12 118301620 to 118301648 28 + TSS region transcription start site region 115559
Tssr118146 12 118301922 to 118301942 20 - TSS region transcription start site region 118146
Tssr118147 12 118301952 to 118301971 19 - TSS region transcription start site region 118147
Tssr115560 12 118316588 to 118316589 1 + TSS region transcription start site region 115560
Tssr115561 12 118376762 to 118376765 3 + TSS region transcription start site region 115561
Gm25577 12 118504928 to 118505034 106 - snRNA gene predicted gene, 25577
D230030E09Rik 12 118518297 to 118530193 11896 - lincRNA gene Riken cDNA D230030E09 gene
Tssr115562 12 118602648 to 118602656 8 + TSS region transcription start site region 115562
Gm9267 12 118602677 to 118603079 402 + pseudogene predicted gene 9267
Tssr118148 12 118657859 to 118657878 19 - TSS region transcription start site region 118148
Gm31626 12 118661702 to 118664004 2302 + lncRNA gene predicted gene, 31626
Gm18441 12 118732439 to 118733055 616 - pseudogene predicted gene, 18441
Gm22537 12 118753554 to 118753752 198 + unclassified non-coding RNA gene predicted gene, 22537
Gm29689 12 118757495 to 118758083 588 - pseudogene predicted gene, 29689
Gm6171 12 118793188 to 118793832 644 - pseudogene predicted gene 6171
Cpgi5232 12 118836242 to 118837379 1137 CpG island CpG island 5232
Cpgi5233 12 118842940 to 118843607 667 CpG island CpG island 5233