Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:117166479-118109343

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43 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ptprn2 12 116485720 to 117276849 791129 + protein coding gene protein tyrosine phosphatase, receptor type, N polypeptide 2
Tssr115533 12 117220367 to 117220369 2 + TSS region transcription start site region 115533
Gm5441 12 117234521 to 117337012 102491 - antisense lncRNA gene predicted gene 5441
Mir153 12 117250817 to 117250885 68 + miRNA gene microRNA 153
Tssr115534 12 117250883 to 117250887 4 + TSS region transcription start site region 115534
Cpgi5226 12 117280042 to 117280254 212 CpG island CpG island 5226
Gm31482 12 117466124 to 117504953 38829 + lncRNA gene predicted gene, 31482
Tssr115535 12 117466180 to 117466227 47 + TSS region transcription start site region 115535
Rapgef5 12 117516479 to 117759737 243258 + protein coding gene Rap guanine nucleotide exchange factor (GEF) 5
Tssr115536 12 117516489 to 117516534 45 + TSS region transcription start site region 115536
2900082C11Rik 12 117531828 to 117532292 464 unclassified gene RIKEN cDNA 2900082C11 gene
Cpgi5227 12 117533555 to 117534755 1200 CpG island CpG island 5227
Tssr115537 12 117533857 to 117533910 53 + TSS region transcription start site region 115537
Tssr115538 12 117533920 to 117533942 22 + TSS region transcription start site region 115538
Tssr115539 12 117533946 to 117533956 10 + TSS region transcription start site region 115539
Gm24741 12 117574342 to 117574447 105 + rRNA gene predicted gene, 24741
A930023M06Rik 12 117602039 to 117603763 1724 + sense intronic lncRNA gene RIKEN cDNA A930023M06 gene
Tssr115540 12 117625078 to 117625085 7 + TSS region transcription start site region 115540
Tssr115541 12 117626357 to 117626385 28 + TSS region transcription start site region 115541
D830016K09Rik 12 117630013 to 117633779 3766 unclassified gene RIKEN cDNA D830016K09 gene
Tssr115542 12 117658023 to 117658045 22 + TSS region transcription start site region 115542
Tssr115543 12 117658050 to 117658064 14 + TSS region transcription start site region 115543
Tssr115544 12 117658076 to 117658087 11 + TSS region transcription start site region 115544
Cpgi5228 12 117688578 to 117689180 602 CpG island CpG island 5228
Tssr115545 12 117688717 to 117688727 10 + TSS region transcription start site region 115545
Tssr115546 12 117688746 to 117688764 18 + TSS region transcription start site region 115546
Tssr115547 12 117688792 to 117688876 84 + TSS region transcription start site region 115547
Gm18955 12 117723974 to 117724568 594 + pseudogene predicted gene, 18955
Tssr115548 12 117742761 to 117742771 10 + TSS region transcription start site region 115548
Tssr115549 12 117763511 to 117763526 15 + TSS region transcription start site region 115549
Tssr115550 12 117830881 to 117830883 2 + TSS region transcription start site region 115550
Gm20613 12 117834007 to 117834351 344 - pseudogene predicted gene 20613
Cpgi5229 12 117843255 to 117844277 1022 CpG island CpG island 5229
Tssr3984 12 117843440 to 117843474 34 + TSS region transcription start site region 3984
Cdca7l 12 117843473 to 117878712 35239 + protein coding gene cell division cycle associated 7 like
Tssr115551 12 117843489 to 117843507 18 + TSS region transcription start site region 115551
Tssr115552 12 117843694 to 117843740 46 + TSS region transcription start site region 115552
Tssr115553 12 117843846 to 117843871 25 + TSS region transcription start site region 115553
Tssr115554 12 117843873 to 117843923 50 + TSS region transcription start site region 115554
Tssr115555 12 117864909 to 117864937 28 + TSS region transcription start site region 115555
Dnah11 12 117877982 to 118199043 321061 - protein coding gene dynein, axonemal, heavy chain 11
Tssr115556 12 117916097 to 117916106 9 + TSS region transcription start site region 115556
Tssr115557 12 117917836 to 117917846 10 + TSS region transcription start site region 115557