Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:116459026-117849056

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71 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ncapg2 12 116405355 to 116463532 58177 + protein coding gene non-SMC condensin II complex, subunit G2
Gm25112 12 116476896 to 116476999 103 - snRNA gene predicted gene, 25112
Rnu7-ps1 12 116478218 to 116478281 63 - pseudogene U7 small nuclear RNA, pseudogene 1
Gm27649 12 116478218 to 116478281 63 - snRNA gene predicted gene, 27649
Cpgi5218 12 116485298 to 116486737 1439 CpG island CpG island 5218
Tssr118138 12 116485601 to 116485614 13 - TSS region transcription start site region 118138
Tssr115525 12 116485714 to 116485784 70 + TSS region transcription start site region 115525
Ptprn2 12 116485720 to 117276849 791129 + protein coding gene protein tyrosine phosphatase, receptor type, N polypeptide 2
Tssr115526 12 116485799 to 116485818 19 + TSS region transcription start site region 115526
Gm6750 12 116507616 to 116507883 267 - pseudogene predicted gene 6750
Cpgi5219 12 116597186 to 116597344 158 CpG island CpG island 5219
Gm17807 12 116597253 to 116597550 297 + pseudogene predicted gene, 17807
Gm31336 12 116735648 to 116757632 21984 - lncRNA gene predicted gene, 31336
Tssr3983 12 116757191 to 116757205 14 - TSS region transcription start site region 3983
Tssr118139 12 116757209 to 116757222 13 - TSS region transcription start site region 118139
Gm48119 12 116850478 to 116853102 2624 - pseudogene predicted gene, 48119
5730406E14Rik 12 117031430 to 117032986 1556 unclassified gene RIKEN cDNA 5730406E14 gene
Gm19374 12 117100169 to 117103012 2843 unclassified gene predicted gene, 19374
Tssr115527 12 117127209 to 117127210 1 + TSS region transcription start site region 115527
Gm10421 12 117144523 to 117151269 6746 - lncRNA gene predicted gene 10421
Cpgi5220 12 117151148 to 117151458 310 CpG island CpG island 5220
Tssr118140 12 117151239 to 117151250 11 - TSS region transcription start site region 118140
Tssr118141 12 117151263 to 117151276 13 - TSS region transcription start site region 118141
Cpgi5221 12 117152669 to 117153189 520 CpG island CpG island 5221
Cpgi5222 12 117153306 to 117154642 1336 CpG island CpG island 5222
Tssr115528 12 117153821 to 117153830 9 + TSS region transcription start site region 115528
Tssr115529 12 117153858 to 117153872 14 + TSS region transcription start site region 115529
Tssr115530 12 117153884 to 117153900 16 + TSS region transcription start site region 115530
Tssr115531 12 117154026 to 117154056 30 + TSS region transcription start site region 115531
Tssr115532 12 117154156 to 117154166 10 + TSS region transcription start site region 115532
Cpgi5223 12 117155353 to 117155978 625 CpG island CpG island 5223
Cpgi5224 12 117159505 to 117159839 334 CpG island CpG island 5224
Cpgi5225 12 117160237 to 117160512 275 CpG island CpG island 5225
Tssr115533 12 117220367 to 117220369 2 + TSS region transcription start site region 115533
Gm5441 12 117234521 to 117337012 102491 - antisense lncRNA gene predicted gene 5441
Mir153 12 117250817 to 117250885 68 + miRNA gene microRNA 153
Tssr115534 12 117250883 to 117250887 4 + TSS region transcription start site region 115534
Cpgi5226 12 117280042 to 117280254 212 CpG island CpG island 5226
Gm31482 12 117466124 to 117504953 38829 + lncRNA gene predicted gene, 31482
Tssr115535 12 117466180 to 117466227 47 + TSS region transcription start site region 115535
Rapgef5 12 117516479 to 117759737 243258 + protein coding gene Rap guanine nucleotide exchange factor (GEF) 5
Tssr115536 12 117516489 to 117516534 45 + TSS region transcription start site region 115536
2900082C11Rik 12 117531828 to 117532292 464 unclassified gene RIKEN cDNA 2900082C11 gene
Cpgi5227 12 117533555 to 117534755 1200 CpG island CpG island 5227
Tssr115537 12 117533857 to 117533910 53 + TSS region transcription start site region 115537
Tssr115538 12 117533920 to 117533942 22 + TSS region transcription start site region 115538
Tssr115539 12 117533946 to 117533956 10 + TSS region transcription start site region 115539
Gm24741 12 117574342 to 117574447 105 + rRNA gene predicted gene, 24741
A930023M06Rik 12 117602039 to 117603763 1724 + sense intronic lncRNA gene RIKEN cDNA A930023M06 gene
Tssr115540 12 117625078 to 117625085 7 + TSS region transcription start site region 115540
Tssr115541 12 117626357 to 117626385 28 + TSS region transcription start site region 115541
D830016K09Rik 12 117630013 to 117633779 3766 unclassified gene RIKEN cDNA D830016K09 gene
Tssr115542 12 117658023 to 117658045 22 + TSS region transcription start site region 115542
Tssr115543 12 117658050 to 117658064 14 + TSS region transcription start site region 115543
Tssr115544 12 117658076 to 117658087 11 + TSS region transcription start site region 115544
Cpgi5228 12 117688578 to 117689180 602 CpG island CpG island 5228
Tssr115545 12 117688717 to 117688727 10 + TSS region transcription start site region 115545
Tssr115546 12 117688746 to 117688764 18 + TSS region transcription start site region 115546
Tssr115547 12 117688792 to 117688876 84 + TSS region transcription start site region 115547
Gm18955 12 117723974 to 117724568 594 + pseudogene predicted gene, 18955
Tssr115548 12 117742761 to 117742771 10 + TSS region transcription start site region 115548
Tssr115549 12 117763511 to 117763526 15 + TSS region transcription start site region 115549
Tssr115550 12 117830881 to 117830883 2 + TSS region transcription start site region 115550
Gm20613 12 117834007 to 117834351 344 - pseudogene predicted gene 20613
Cpgi5229 12 117843255 to 117844277 1022 CpG island CpG island 5229
Tssr3984 12 117843440 to 117843474 34 + TSS region transcription start site region 3984
Cdca7l 12 117843473 to 117878712 35239 + protein coding gene cell division cycle associated 7 like
Tssr115551 12 117843489 to 117843507 18 + TSS region transcription start site region 115551
Tssr115552 12 117843694 to 117843740 46 + TSS region transcription start site region 115552
Tssr115553 12 117843846 to 117843871 25 + TSS region transcription start site region 115553
Tssr115554 12 117843873 to 117843923 50 + TSS region transcription start site region 115554