Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:116402209-117112222

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26 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D430020J02Rik 12 116401947 to 116405161 3214 - bidirectional promoter lncRNA gene RIKEN cDNA D430020J02 gene
Cpgi5217 12 116405003 to 116405986 983 CpG island CpG island 5217
Tssr118135 12 116405103 to 116405154 51 - TSS region transcription start site region 118135
Tssr118136 12 116405157 to 116405185 28 - TSS region transcription start site region 118136
Tssr118137 12 116405189 to 116405217 28 - TSS region transcription start site region 118137
Tssr115522 12 116405341 to 116405363 22 + TSS region transcription start site region 115522
Ncapg2 12 116405355 to 116463532 58177 + protein coding gene non-SMC condensin II complex, subunit G2
Tssr115523 12 116405397 to 116405466 69 + TSS region transcription start site region 115523
Tssr115524 12 116442949 to 116442976 27 + TSS region transcription start site region 115524
Gm25112 12 116476896 to 116476999 103 - snRNA gene predicted gene, 25112
Gm27649 12 116478218 to 116478281 63 - snRNA gene predicted gene, 27649
Rnu7-ps1 12 116478218 to 116478281 63 - pseudogene U7 small nuclear RNA, pseudogene 1
Cpgi5218 12 116485298 to 116486737 1439 CpG island CpG island 5218
Tssr118138 12 116485601 to 116485614 13 - TSS region transcription start site region 118138
Tssr115525 12 116485714 to 116485784 70 + TSS region transcription start site region 115525
Ptprn2 12 116485720 to 117276849 791129 + protein coding gene protein tyrosine phosphatase, receptor type, N polypeptide 2
Tssr115526 12 116485799 to 116485818 19 + TSS region transcription start site region 115526
Gm6750 12 116507616 to 116507883 267 - pseudogene predicted gene 6750
Cpgi5219 12 116597186 to 116597344 158 CpG island CpG island 5219
Gm17807 12 116597253 to 116597550 297 + pseudogene predicted gene, 17807
Gm31336 12 116735648 to 116757632 21984 - lncRNA gene predicted gene, 31336
Tssr3983 12 116757191 to 116757205 14 - TSS region transcription start site region 3983
Tssr118139 12 116757209 to 116757222 13 - TSS region transcription start site region 118139
Gm48119 12 116850478 to 116853102 2624 - pseudogene predicted gene, 48119
5730406E14Rik 12 117031430 to 117032986 1556 unclassified gene RIKEN cDNA 5730406E14 gene
Gm19374 12 117100169 to 117103012 2843 unclassified gene predicted gene, 19374